Cow genome map
| Conread name: | Ss1.1-rspc033_l13.5 |
| Conread position: | 5-642 |
| Cow position: | chr11:61400277-61399615 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 207 |
| Conread position: | 7-643 |
| Cow position: | chr11:23880833-23881511 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 16-166 |
| Cow position: | chr11:44490802-44490648 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 16-173 |
| Cow position: | chr11:28064905-28065071 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 16-239 |
| Cow position: | chr11:4034534-4034290 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 16-314 |
| Cow position: | chr11:74424408-74424733 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 306 |
| Conread position: | 16-328 |
| Cow position: | chr11:9601502-9601178 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 16-414 |
| Cow position: | chr11:49558866-49558448 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 16-416 |
| Cow position: | chr11:21899031-21898617 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 16-579 |
| Cow position: | chr11:13065153-13064571 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 378 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 16-591 |
| Cow position: | chr11:3856033-3856625 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 345 |
| Conread position: | 16-601 |
| Cow position: | chr11:30253047-30253660 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 276 |
| Conread position: | 16-601 |
| Cow position: | chr11:40775185-40774591 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 294 |
| Conread position: | 16-637 |
| Cow position: | chr11:87142392-87143065 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 125 |
| Conread position: | 16-642 |
| Cow position: | chr11:3493806-3494479 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 349 |
| Conread position: | 16-643 |
| Cow position: | chr11:26070237-26069556 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 16-643 |
| Cow position: | chr11:58135208-58135878 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 127 |
| Conread position: | 16-644 |
| Cow position: | chr11:30123027-30122374 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 356 |
| Conread position: | 17-392 |
| Cow position: | chr11:4269589-4269187 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 351 |
| Conread position: | 17-423 |
| Cow position: | chr11:44156434-44156013 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 244 |
| Conread position: | 17-436 |
| Cow position: | chr11:44252610-44253068 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 300 |
| Conread position: | 17-601 |
| Cow position: | chr11:41169881-41169256 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 348 |
| Conread position: | 17-614 |
| Cow position: | chr11:29667793-29667145 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 563 |
| Conread position: | 17-626 |
| Cow position: | chr11:71330408-71331060 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 343 |
| Conread position: | 17-632 |
| Cow position: | chr11:26124114-26123440 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 353 |
| Conread position: | 17-641 |
| Cow position: | chr11:38834622-38833960 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 184 |
| Conread position: | 17-643 |
| Cow position: | chr11:10848263-10848928 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 352 |
| Conread position: | 17-643 |
| Cow position: | chr11:12357601-12356912 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 381 |
| Conread position: | 17-643 |
| Cow position: | chr11:24394126-24394803 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 240 |
| Conread position: | 17-643 |
| Cow position: | chr11:72310221-72309550 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 212 |
| Conread position: | 18-426 |
| Cow position: | chr11:28053801-28053390 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 119 |
| Conread position: | 18-601 |
| Cow position: | chr11:20733422-20732797 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 370 |
| Conread position: | 18-643 |
| Cow position: | chr11:66729909-66730575 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 19-314 |
| Cow position: | chr11:21444307-21444599 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 19-643 |
| Cow position: | chr11:44582520-44581853 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 344 |
| Conread position: | 20-421 |
| Cow position: | chr11:81851892-81851495 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 28, 75 |
| Conread position: | 20-599 |
| Cow position: | chr11:31926980-31927590 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 128 |
| Conread position: | 24-642 |
| Cow position: | chr11:47759457-47758789 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 41-379 |
| Cow position: | chr11:35504358-35504010 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 109, 11 |
| Conread position: | 49-573 |
| Cow position: | chr11:26074114-26073561 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 333 |
| Conread position: | 53-385 |
| Cow position: | chr11:26564232-26563899 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 115, 12 |
| Conread position: | 66-601 |
| Cow position: | chr11:10883177-10883724 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 67-290 |
| Cow position: | chr11:24336334-24336107 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 67-601 |
| Cow position: | chr11:50026876-50026311 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 52 |
| Conread position: | 67-601 |
| Cow position: | chr11:67451366-67451929 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 67-603 |
| Cow position: | chr11:64355694-64356238 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 67-643 |
| Cow position: | chr11:1489279-1488688 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 28 |
| Conread position: | 68-600 |
| Cow position: | chr11:2727609-2728155 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 69-468 |
| Cow position: | chr11:14728174-14727766 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 99, 250 |
| Conread position: | 69-468 |
| Cow position: | chr11:29613120-29612698 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 201 |
| Conread position: | 69-601 |
| Cow position: | chr11:39804612-39805171 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 69-601 |
| Cow position: | chr11:57627179-57626616 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 290 |
| Conread position: | 69-632 |
| Cow position: | chr11:17106809-17106204 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 293 |
| Conread position: | 69-642 |
| Cow position: | chr11:44517991-44517376 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 69-643 |
| Cow position: | chr11:67845697-67845082 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 266 |
| Conread position: | 69-644 |
| Cow position: | chr11:32452701-32453321 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 313 |
| Conread position: | 72-601 |
| Cow position: | chr11:4062997-4062476 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 72-602 |
| Cow position: | chr11:35254378-35253863 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 362 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 153, 18 |
| Conread position: | 73-229 |
| Cow position: | chr11:37476104-37475937 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 61, 155 |
| Conread position: | 73-392 |
| Cow position: | chr11:36324272-36324590 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 73-422 |
| Cow position: | chr11:54216381-54216012 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 286 |
| Conread position: | 73-477 |
| Cow position: | chr11:9975016-9974601 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 77, 253 |
| Conread position: | 73-499 |
| Cow position: | chr11:1495153-1494716 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 46 |
| Conread position: | 73-504 |
| Cow position: | chr11:80473396-80472957 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 73-564 |
| Cow position: | chr11:42311563-42311051 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 268 |
| Conread position: | 73-581 |
| Cow position: | chr11:9224668-9224171 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 356 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 73-584 |
| Cow position: | chr11:18070060-18069523 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 60 |
| Conread position: | 73-599 |
| Cow position: | chr11:18887730-18888254 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 366 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 73-601 |
| Cow position: | chr11:9156270-9155721 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 195 |
| Conread position: | 73-601 |
| Cow position: | chr11:17547040-17547594 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 284 |
| Conread position: | 73-601 |
| Cow position: | chr11:19063195-19062640 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 73-601 |
| Cow position: | chr11:28228888-28228331 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 282 |
| Conread position: | 73-601 |
| Cow position: | chr11:28391846-28392402 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 199 |
| Conread position: | 73-601 |
| Cow position: | chr11:35264753-35265292 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 73-601 |
| Cow position: | chr11:53286290-53285736 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 212 |
| Conread position: | 73-601 |
| Cow position: | chr11:63654456-63653896 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 288 |
| Conread position: | 73-601 |
| Cow position: | chr11:75554121-75553579 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 373 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 9, 229 |
| Conread position: | 73-642 |
| Cow position: | chr11:43513753-43513140 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 44 |
| Conread position: | 73-643 |
| Cow position: | chr11:4026732-4026122 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 73-643 |
| Cow position: | chr11:19101609-19101000 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 73-643 |
| Cow position: | chr11:26548403-26549015 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 308 |
| Conread position: | 73-643 |
| Cow position: | chr11:73134167-73134786 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 299 |
| Conread position: | 73-643 |
| Cow position: | chr11:85392948-85392344 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 177 |
| Conread position: | 73-644 |
| Cow position: | chr11:15943468-15942891 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 101 |
| Conread position: | 74-603 |
| Cow position: | chr11:26784138-26784690 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 281 |
| Conread position: | 74-608 |
| Cow position: | chr11:63275521-63274972 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 361 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 75-315 |
| Cow position: | chr11:9215892-9215655 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 89, 59 |
| Conread position: | 75-387 |
| Cow position: | chr11:21928306-21927989 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 67, 93 |
| Conread position: | 75-475 |
| Cow position: | chr11:6682732-6683151 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 70, 239 |
| Conread position: | 75-571 |
| Cow position: | chr11:11989012-11989536 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 283 |
| Conread position: | 75-643 |
| Cow position: | chr11:67154568-67155166 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 234 |
| Conread position: | 77-453 |
| Cow position: | chr11:30278477-30278868 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 77-601 |
| Cow position: | chr11:52420285-52420828 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 216 |
| Conread position: | 77-608 |
| Cow position: | chr11:9733796-9733239 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 280 |
| Conread position: | 77-644 |
| Cow position: | chr11:32685778-32686349 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 52 |
| Conread position: | 79-338 |
| Cow position: | chr11:28421020-28421278 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 88-642 |
| Cow position: | chr11:27657338-27657927 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 89-636 |
| Cow position: | chr11:76373104-76372549 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 187 |
| Conread position: | 90-587 |
| Cow position: | chr11:9204941-9204440 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 97-296 |
| Cow position: | chr11:4056595-4056383 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 120-479 |
| Cow position: | chr11:25865911-25865537 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 225 |
| Conread position: | 123-602 |
| Cow position: | chr11:28740370-28739871 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 334 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 59, 167 |
| Conread position: | 125-336 |
| Cow position: | chr11:31932374-31932606 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 21, 98 |
| Conread position: | 126-601 |
| Cow position: | chr11:49239028-49238520 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 240 |
| Conread position: | 130-514 |
| Cow position: | chr11:40507165-40506776 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 81 |
| Conread position: | 130-601 |
| Cow position: | chr11:23126699-23126234 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 140 |
| Conread position: | 139-643 |
| Cow position: | chr11:53431079-53430543 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 148-601 |
| Cow position: | chr11:31163659-31164114 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 300 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 24, 134 |
| Conread position: | 153-497 |
| Cow position: | chr11:37285573-37285918 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 161-433 |
| Cow position: | chr11:54484299-54484023 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 51, 131 |
| Conread position: | 161-575 |
| Cow position: | chr11:50949357-50948915 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 128 |
| Conread position: | 161-601 |
| Cow position: | chr11:3261481-3261924 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 51, 188 |
| Conread position: | 162-602 |
| Cow position: | chr11:73462162-73461701 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 116 |
| Conread position: | 164-614 |
| Cow position: | chr11:23249485-23249020 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 166-599 |
| Cow position: | chr11:27669007-27668560 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 166-602 |
| Cow position: | chr11:29232001-29231544 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 227 |
| Conread position: | 167-601 |
| Cow position: | chr11:2833312-2833725 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 167-626 |
| Cow position: | chr11:54254432-54254916 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 50, 175 |
| Conread position: | 170-601 |
| Cow position: | chr11:10056496-10056936 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 171-475 |
| Cow position: | chr11:20511605-20511908 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 42, 162 |
| Conread position: | 171-600 |
| Cow position: | chr11:49039389-49038945 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 110 |
| Conread position: | 171-601 |
| Cow position: | chr11:20506229-20506693 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 319 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 42, 162 |
| Conread position: | 177-562 |
| Cow position: | chr11:30208129-30208526 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 209-586 |
| Cow position: | chr11:54467208-54467565 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 216-503 |
| Cow position: | chr11:40329948-40329652 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 150 |
| Conread position: | 216-608 |
| Cow position: | chr11:35894868-35894462 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 128 |
| Conread position: | 218-603 |
| Cow position: | chr11:21475165-21475559 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 220-583 |
| Cow position: | chr11:31754999-31754643 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 220-621 |
| Cow position: | chr11:22028077-22027680 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 221-600 |
| Cow position: | chr11:12387471-12387848 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 222-417 |
| Cow position: | chr11:81341222-81341030 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 223-514 |
| Cow position: | chr11:5908484-5908189 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 232-642 |
| Cow position: | chr11:17119288-17118859 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 110 |
| Conread position: | 241-585 |
| Cow position: | chr11:9302372-9302018 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 13, 234 |
| Conread position: | 241-642 |
| Cow position: | chr11:50836602-50836178 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 10 |
| Conread position: | 244-644 |
| Cow position: | chr11:3104380-3103958 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 145, 163 |
| Conread position: | 251-642 |
| Cow position: | chr11:15986324-15986732 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 93 |
| Conread position: | 256-642 |
| Cow position: | chr11:47738460-47738058 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 86 |
| Conread position: | 261-601 |
| Cow position: | chr11:17281395-17281042 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 80 |
| Conread position: | 273-502 |
| Cow position: | chr11:52808456-52808683 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 116, 65 |
| Conread position: | 280-603 |
| Cow position: | chr11:25393297-25393628 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 285-602 |
| Cow position: | chr11:4034287-4033972 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 288-602 |
| Cow position: | chr11:13048653-13048330 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 307-489 |
| Cow position: | chr11:9215377-9215191 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 82, 10 |
| Conread position: | 315-643 |
| Cow position: | chr11:4055187-4054847 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 327-569 |
| Cow position: | chr11:41234165-41234419 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 327-601 |
| Cow position: | chr11:11590117-11590403 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 331-642 |
| Cow position: | chr11:86876730-86876394 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 351-501 |
| Cow position: | chr11:12372663-12372507 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 351-603 |
| Cow position: | chr11:37802238-37802501 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 5 |
| Conread position: | 351-604 |
| Cow position: | chr11:31863258-31863526 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 351-614 |
| Cow position: | chr11:7117584-7117861 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 351-643 |
| Cow position: | chr11:32079614-32079298 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 360-503 |
| Cow position: | chr11:33976893-33976745 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 360-603 |
| Cow position: | chr11:49552970-49552714 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 33, 241 |
| Conread position: | 368-601 |
| Cow position: | chr11:63647251-63647498 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 373-642 |
| Cow position: | chr11:10957018-10957305 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 126, 24 |
| Conread position: | 397-642 |
| Cow position: | chr11:34018226-34018494 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 19, 169 |
| Conread position: | 410-643 |
| Cow position: | chr11:44155761-44155511 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 96, 84 |
| Conread position: | 419-643 |
| Cow position: | chr11:4268930-4268688 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 430-643 |
| Cow position: | chr11:40405794-40405563 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 432-644 |
| Cow position: | chr11:11578479-11578252 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 72, 139 |
| Conread position: | 436-642 |
| Cow position: | chr11:44041972-44042197 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 448-625 |
| Cow position: | chr11:21470090-21470274 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 453-643 |
| Cow position: | chr11:12318745-12318537 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 459-602 |
| Cow position: | chr11:47728404-47728254 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 474-601 |
| Cow position: | chr11:42371115-42371249 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.