Cow genome map
Conread name: | Ss1.1-rspc033_l13.5 |
Conread position: | 3-601 |
Cow position: | chr12:8139032-8138435 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 406 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 6, 31 |
Conread position: | 12-642 |
Cow position: | chr12:35345645-35346302 (view UCSC Genome Browser custom track) |
Alignm length: | 670 |
Alignm identity: | 482 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 25 |
Conread position: | 12-643 |
Cow position: | chr12:28005004-28005648 (view UCSC Genome Browser custom track) |
Alignm length: | 668 |
Alignm identity: | 448 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 63 |
Conread position: | 16-643 |
Cow position: | chr12:48471779-48471121 (view UCSC Genome Browser custom track) |
Alignm length: | 664 |
Alignm identity: | 496 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 126 |
Conread position: | 17-423 |
Cow position: | chr12:25099973-25099533 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 195 |
Conread position: | 17-643 |
Cow position: | chr12:6405542-6404862 (view UCSC Genome Browser custom track) |
Alignm length: | 686 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 314 |
Conread position: | 17-643 |
Cow position: | chr12:11099322-11100011 (view UCSC Genome Browser custom track) |
Alignm length: | 692 |
Alignm identity: | 493 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 354 |
Conread position: | 17-643 |
Cow position: | chr12:27854864-27854188 (view UCSC Genome Browser custom track) |
Alignm length: | 681 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 351 |
Conread position: | 17-643 |
Cow position: | chr12:27931804-27931131 (view UCSC Genome Browser custom track) |
Alignm length: | 678 |
Alignm identity: | 493 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 248 |
Conread position: | 17-643 |
Cow position: | chr12:42858437-42857758 (view UCSC Genome Browser custom track) |
Alignm length: | 683 |
Alignm identity: | 497 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 351 |
Conread position: | 17-644 |
Cow position: | chr12:8676996-8676312 (view UCSC Genome Browser custom track) |
Alignm length: | 689 |
Alignm identity: | 487 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 251 |
Conread position: | 18-601 |
Cow position: | chr12:18465066-18465604 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 385 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 151, 39 |
Conread position: | 19-600 |
Cow position: | chr12:19222125-19222695 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 383 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 27, 38 |
Conread position: | 24-493 |
Cow position: | chr12:21199089-21199589 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 307 |
Conread position: | 52-593 |
Cow position: | chr12:7863728-7863162 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 357 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 85, 17 |
Conread position: | 67-601 |
Cow position: | chr12:1776808-1776241 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 264 |
Conread position: | 67-601 |
Cow position: | chr12:32654706-32655274 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 303 |
Conread position: | 69-302 |
Cow position: | chr12:21387082-21386830 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 180 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 74, 246 |
Conread position: | 69-362 |
Cow position: | chr12:31202328-31202016 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 225 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 80, 290 |
Conread position: | 69-364 |
Cow position: | chr12:349563-349876 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 221 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 102, 125 |
Conread position: | 69-423 |
Cow position: | chr12:11580974-11581307 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 255 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 70, 93 |
Conread position: | 69-601 |
Cow position: | chr12:42607105-42606527 (view UCSC Genome Browser custom track) |
Alignm length: | 582 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 189 |
Conread position: | 69-626 |
Cow position: | chr12:20996921-20996341 (view UCSC Genome Browser custom track) |
Alignm length: | 586 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 285 |
Conread position: | 69-634 |
Cow position: | chr12:18993498-18992915 (view UCSC Genome Browser custom track) |
Alignm length: | 599 |
Alignm identity: | 381 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 77, 154 |
Conread position: | 69-640 |
Cow position: | chr12:3362100-3362707 (view UCSC Genome Browser custom track) |
Alignm length: | 614 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 291 |
Conread position: | 69-644 |
Cow position: | chr12:21482289-21482864 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 422 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 13 |
Conread position: | 73-421 |
Cow position: | chr12:600199-599842 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 261 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 73, 23 |
Conread position: | 73-435 |
Cow position: | chr12:33119323-33119714 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 275 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 57, 23 |
Conread position: | 73-482 |
Cow position: | chr12:20843782-20844189 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 172 |
Conread position: | 73-571 |
Cow position: | chr12:24977652-24977149 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 351 |
Alignm E-value: | 7e-40 |
Alignm gaps (pig, cow): | 41, 63 |
Conread position: | 73-601 |
Cow position: | chr12:1403657-1404221 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 295 |
Conread position: | 73-608 |
Cow position: | chr12:23141028-23140440 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 153 |
Conread position: | 73-637 |
Cow position: | chr12:5144852-5145427 (view UCSC Genome Browser custom track) |
Alignm length: | 586 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 71 |
Conread position: | 73-642 |
Cow position: | chr12:1888395-1887791 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 289 |
Conread position: | 74-601 |
Cow position: | chr12:14661184-14660626 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 287 |
Conread position: | 77-573 |
Cow position: | chr12:21942910-21943432 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 211 |
Conread position: | 77-642 |
Cow position: | chr12:37560178-37560780 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 304 |
Conread position: | 78-388 |
Cow position: | chr12:3209124-3209445 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 214 |
Alignm E-value: | 8e-31 |
Alignm gaps (pig, cow): | 56, 272 |
Conread position: | 84-602 |
Cow position: | chr12:19870091-19870608 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 30 |
Conread position: | 115-601 |
Cow position: | chr12:21209869-21210387 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 248 |
Conread position: | 130-387 |
Cow position: | chr12:6861270-6861526 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 190 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 16, 91 |
Conread position: | 142-599 |
Cow position: | chr12:24433847-24433364 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 216 |
Conread position: | 158-642 |
Cow position: | chr12:21429270-21429785 (view UCSC Genome Browser custom track) |
Alignm length: | 518 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 191 |
Conread position: | 161-596 |
Cow position: | chr12:34174382-34174830 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 188 |
Conread position: | 164-643 |
Cow position: | chr12:22204445-22203936 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 33 |
Conread position: | 188-361 |
Cow position: | chr12:20461775-20461948 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 138 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 32, 85 |
Conread position: | 209-600 |
Cow position: | chr12:29445071-29445452 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 260 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 115, 25 |
Conread position: | 216-601 |
Cow position: | chr12:21092384-21092003 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 25 |
Conread position: | 216-642 |
Cow position: | chr12:24994638-24994186 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 128 |
Conread position: | 244-643 |
Cow position: | chr12:17967167-17967583 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 94 |
Conread position: | 254-643 |
Cow position: | chr12:22568390-22567980 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 72 |
Conread position: | 266-432 |
Cow position: | chr12:11192993-11193159 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 120 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 154, 90 |
Conread position: | 266-432 |
Cow position: | chr12:11204264-11204430 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 120 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 154, 90 |
Conread position: | 266-601 |
Cow position: | chr12:21253214-21252862 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 29 |
Conread position: | 277-601 |
Cow position: | chr12:30677025-30677361 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 226 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 97, 48 |
Conread position: | 308-601 |
Cow position: | chr12:35634088-35633798 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 198 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 118, 38 |
Conread position: | 328-601 |
Cow position: | chr12:30685184-30685457 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 201 |
Alignm E-value: | 8.00001e-41 |
Alignm gaps (pig, cow): | 61, 13 |
Conread position: | 328-643 |
Cow position: | chr12:25262072-25261743 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 205 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 88, 200 |
Conread position: | 337-614 |
Cow position: | chr12:43913286-43913575 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 7 |
Conread position: | 342-642 |
Cow position: | chr12:34174794-34175120 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 18 |
Conread position: | 349-632 |
Cow position: | chr12:20461771-20461464 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 228 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 48, 11 |
Conread position: | 355-601 |
Cow position: | chr12:3209438-3209693 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 177 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 57, 0 |
Conread position: | 360-643 |
Cow position: | chr12:25099000-25098699 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 211 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 25, 55 |
Conread position: | 385-628 |
Cow position: | chr12:15950309-15950058 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 189 |
Alignm E-value: | 8.00001e-41 |
Alignm gaps (pig, cow): | 35, 192 |
Conread position: | 390-642 |
Cow position: | chr12:33042863-33043129 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 195 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 34, 226 |
Conread position: | 396-601 |
Cow position: | chr12:39038957-39038744 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 146 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 399-632 |
Cow position: | chr12:756699-756938 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 173 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 108, 81 |
Conread position: | 419-573 |
Cow position: | chr12:11581536-11581695 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 126 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 86, 140 |
Conread position: | 419-601 |
Cow position: | chr12:21897358-21897545 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 141 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 87, 24 |
Conread position: | 419-601 |
Cow position: | chr12:22519445-22519256 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 141 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 440-632 |
Cow position: | chr12:21428037-21427827 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 158 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.