Cow genome map


           Conread name:
           Ss1.1-rspc033_l13.5
        

               Conread position:
               3-601
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               406
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               6, 31
               

               Conread position:
               12-642
               

               Cow position:
               
               

               Alignm length:
               670
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 25
               

               Conread position:
               12-643
               

               Cow position:
               
               

               Alignm length:
               668
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 63
               

               Conread position:
               16-643
               

               Cow position:
               
               

               Alignm length:
               664
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 126
               

               Conread position:
               17-423
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 195
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               686
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 314
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               692
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 354
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               681
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 351
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               678
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 248
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               683
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 351
               

               Conread position:
               17-644
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 251
               

               Conread position:
               18-601
               

               Cow position:
               
               

               Alignm length:
               590
               

               Alignm identity:
               385
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               151, 39
               

               Conread position:
               19-600
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               383
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               27, 38
               

               Conread position:
               24-493
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 307
               

               Conread position:
               52-593
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               357
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               85, 17
               

               Conread position:
               67-601
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 264
               

               Conread position:
               67-601
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 303
               

               Conread position:
               69-302
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               74, 246
               

               Conread position:
               69-362
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               225
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               80, 290
               

               Conread position:
               69-364
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               102, 125
               

               Conread position:
               69-423
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               70, 93
               

               Conread position:
               69-601
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 189
               

               Conread position:
               69-626
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 285
               

               Conread position:
               69-634
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               381
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               77, 154
               

               Conread position:
               69-640
               

               Cow position:
               
               

               Alignm length:
               614
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 291
               

               Conread position:
               69-644
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 13
               

               Conread position:
               73-421
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               261
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               73, 23
               

               Conread position:
               73-435
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               57, 23
               

               Conread position:
               73-482
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 172
               

               Conread position:
               73-571
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               351
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               41, 63
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 295
               

               Conread position:
               73-608
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 153
               

               Conread position:
               73-637
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 71
               

               Conread position:
               73-642
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 289
               

               Conread position:
               74-601
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 287
               

               Conread position:
               77-573
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 211
               

               Conread position:
               77-642
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 304
               

               Conread position:
               78-388
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               56, 272
               

               Conread position:
               84-602
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 30
               

               Conread position:
               115-601
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 248
               

               Conread position:
               130-387
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               16, 91
               

               Conread position:
               142-599
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 216
               

               Conread position:
               158-642
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 191
               

               Conread position:
               161-596
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 188
               

               Conread position:
               164-643
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 33
               

               Conread position:
               188-361
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               32, 85
               

               Conread position:
               209-600
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               115, 25
               

               Conread position:
               216-601
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 25
               

               Conread position:
               216-642
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 128
               

               Conread position:
               244-643
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 94
               

               Conread position:
               254-643
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 72
               

               Conread position:
               266-432
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               154, 90
               

               Conread position:
               266-432
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               154, 90
               

               Conread position:
               266-601
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 29
               

               Conread position:
               277-601
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               97, 48
               

               Conread position:
               308-601
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               118, 38
               

               Conread position:
               328-601
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               61, 13
               

               Conread position:
               328-643
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               88, 200
               

               Conread position:
               337-614
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 7
               

               Conread position:
               342-642
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 18
               

               Conread position:
               349-632
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               228
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               48, 11
               

               Conread position:
               355-601
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               360-643
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               25, 55
               

               Conread position:
               385-628
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               35, 192
               

               Conread position:
               390-642
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               34, 226
               

               Conread position:
               396-601
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               399-632
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               108, 81
               

               Conread position:
               419-573
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               86, 140
               

               Conread position:
               419-601
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               87, 24
               

               Conread position:
               419-601
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               440-632
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               63, 0
               
Show alignments to all cow chromosomes.