Cow genome map

Conread name: Ss1.1-rspc033_l13.5

Conread position: 3-601
Cow position: chr12:8139032-8138435 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 406
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 6, 31

Conread position: 12-642
Cow position: chr12:35345645-35346302 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 25

Conread position: 12-643
Cow position: chr12:28005004-28005648 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 63

Conread position: 16-643
Cow position: chr12:48471779-48471121 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 126

Conread position: 17-423
Cow position: chr12:25099973-25099533 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 195

Conread position: 17-643
Cow position: chr12:6405542-6404862 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 314

Conread position: 17-643
Cow position: chr12:11099322-11100011 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 354

Conread position: 17-643
Cow position: chr12:27854864-27854188 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 351

Conread position: 17-643
Cow position: chr12:27931804-27931131 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 248

Conread position: 17-643
Cow position: chr12:42858437-42857758 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 351

Conread position: 17-644
Cow position: chr12:8676996-8676312 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 251

Conread position: 18-601
Cow position: chr12:18465066-18465604 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 385
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 151, 39

Conread position: 19-600
Cow position: chr12:19222125-19222695 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 383
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 27, 38

Conread position: 24-493
Cow position: chr12:21199089-21199589 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 307

Conread position: 52-593
Cow position: chr12:7863728-7863162 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 357
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 85, 17

Conread position: 67-601
Cow position: chr12:1776808-1776241 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 264

Conread position: 67-601
Cow position: chr12:32654706-32655274 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 303

Conread position: 69-302
Cow position: chr12:21387082-21386830 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 74, 246

Conread position: 69-362
Cow position: chr12:31202328-31202016 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 80, 290

Conread position: 69-364
Cow position: chr12:349563-349876 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 221
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 102, 125

Conread position: 69-423
Cow position: chr12:11580974-11581307 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 255
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 70, 93

Conread position: 69-601
Cow position: chr12:42607105-42606527 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 189

Conread position: 69-626
Cow position: chr12:20996921-20996341 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 285

Conread position: 69-634
Cow position: chr12:18993498-18992915 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 381
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 154

Conread position: 69-640
Cow position: chr12:3362100-3362707 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 291

Conread position: 69-644
Cow position: chr12:21482289-21482864 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 13

Conread position: 73-421
Cow position: chr12:600199-599842 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 73, 23

Conread position: 73-435
Cow position: chr12:33119323-33119714 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 275
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 23

Conread position: 73-482
Cow position: chr12:20843782-20844189 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 172

Conread position: 73-571
Cow position: chr12:24977652-24977149 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 351
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 41, 63

Conread position: 73-601
Cow position: chr12:1403657-1404221 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 295

Conread position: 73-608
Cow position: chr12:23141028-23140440 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 153

Conread position: 73-637
Cow position: chr12:5144852-5145427 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 71

Conread position: 73-642
Cow position: chr12:1888395-1887791 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 289

Conread position: 74-601
Cow position: chr12:14661184-14660626 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 287

Conread position: 77-573
Cow position: chr12:21942910-21943432 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 211

Conread position: 77-642
Cow position: chr12:37560178-37560780 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 304

Conread position: 78-388
Cow position: chr12:3209124-3209445 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 214
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 56, 272

Conread position: 84-602
Cow position: chr12:19870091-19870608 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 30

Conread position: 115-601
Cow position: chr12:21209869-21210387 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 248

Conread position: 130-387
Cow position: chr12:6861270-6861526 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 91

Conread position: 142-599
Cow position: chr12:24433847-24433364 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 216

Conread position: 158-642
Cow position: chr12:21429270-21429785 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 191

Conread position: 161-596
Cow position: chr12:34174382-34174830 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 188

Conread position: 164-643
Cow position: chr12:22204445-22203936 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 33

Conread position: 188-361
Cow position: chr12:20461775-20461948 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 32, 85

Conread position: 209-600
Cow position: chr12:29445071-29445452 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 260
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 115, 25

Conread position: 216-601
Cow position: chr12:21092384-21092003 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 25

Conread position: 216-642
Cow position: chr12:24994638-24994186 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 128

Conread position: 244-643
Cow position: chr12:17967167-17967583 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 94

Conread position: 254-643
Cow position: chr12:22568390-22567980 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 266-432
Cow position: chr12:11192993-11193159 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 154, 90

Conread position: 266-432
Cow position: chr12:11204264-11204430 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 154, 90

Conread position: 266-601
Cow position: chr12:21253214-21252862 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 29

Conread position: 277-601
Cow position: chr12:30677025-30677361 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 226
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 48

Conread position: 308-601
Cow position: chr12:35634088-35633798 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 198
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 118, 38

Conread position: 328-601
Cow position: chr12:30685184-30685457 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 61, 13

Conread position: 328-643
Cow position: chr12:25262072-25261743 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 205
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 88, 200

Conread position: 337-614
Cow position: chr12:43913286-43913575 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 7

Conread position: 342-642
Cow position: chr12:34174794-34175120 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 18

Conread position: 349-632
Cow position: chr12:20461771-20461464 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 48, 11

Conread position: 355-601
Cow position: chr12:3209438-3209693 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 57, 0

Conread position: 360-643
Cow position: chr12:25099000-25098699 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 55

Conread position: 385-628
Cow position: chr12:15950309-15950058 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 35, 192

Conread position: 390-642
Cow position: chr12:33042863-33043129 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 34, 226

Conread position: 396-601
Cow position: chr12:39038957-39038744 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 399-632
Cow position: chr12:756699-756938 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 108, 81

Conread position: 419-573
Cow position: chr12:11581536-11581695 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 86, 140

Conread position: 419-601
Cow position: chr12:21897358-21897545 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 87, 24

Conread position: 419-601
Cow position: chr12:22519445-22519256 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 87, 0

Conread position: 440-632
Cow position: chr12:21428037-21427827 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 63, 0

Show alignments to all cow chromosomes.