Cow genome map

Conread name: Ss1.1-rspc033_l13.5

Conread position: 1-603
Cow position:
Alignm length: 641
Alignm identity: 405
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 9, 164

Conread position: 7-601
Cow position:
Alignm length: 631
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 304

Conread position: 7-641
Cow position:
Alignm length: 699
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 369

Conread position: 12-601
Cow position:
Alignm length: 635
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 127

Conread position: 12-643
Cow position:
Alignm length: 680
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 22

Conread position: 15-637
Cow position:
Alignm length: 650
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 9

Conread position: 16-251
Cow position:
Alignm length: 248
Alignm identity: 178
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 40, 89

Conread position: 16-260
Cow position:
Alignm length: 272
Alignm identity: 192
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 53, 37

Conread position: 16-292
Cow position:
Alignm length: 301
Alignm identity: 221
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 0

Conread position: 16-372
Cow position:
Alignm length: 395
Alignm identity: 281
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 12, 361

Conread position: 16-392
Cow position:
Alignm length: 406
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 114

Conread position: 16-434
Cow position:
Alignm length: 447
Alignm identity: 299
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 43, 113

Conread position: 16-478
Cow position:
Alignm length: 497
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 350

Conread position: 16-485
Cow position:
Alignm length: 495
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 8

Conread position: 16-504
Cow position:
Alignm length: 517
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 18

Conread position: 16-601
Cow position:
Alignm length: 611
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 15

Conread position: 16-635
Cow position:
Alignm length: 656
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 68

Conread position: 16-642
Cow position:
Alignm length: 676
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 42

Conread position: 17-423
Cow position:
Alignm length: 449
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 360

Conread position: 17-601
Cow position:
Alignm length: 630
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 373

Conread position: 17-608
Cow position:
Alignm length: 615
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 24

Conread position: 17-643
Cow position:
Alignm length: 672
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 122

Conread position: 17-643
Cow position:
Alignm length: 669
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 346

Conread position: 17-643
Cow position:
Alignm length: 680
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 355

Conread position: 17-643
Cow position:
Alignm length: 682
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 306

Conread position: 17-643
Cow position:
Alignm length: 684
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 351

Conread position: 17-643
Cow position:
Alignm length: 678
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 71

Conread position: 17-643
Cow position:
Alignm length: 670
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 349

Conread position: 17-643
Cow position:
Alignm length: 685
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 344

Conread position: 17-643
Cow position:
Alignm length: 683
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 347

Conread position: 17-644
Cow position:
Alignm length: 672
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 345

Conread position: 17-644
Cow position:
Alignm length: 677
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 245

Conread position: 17-644
Cow position:
Alignm length: 680
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 74

Conread position: 18-233
Cow position:
Alignm length: 230
Alignm identity: 162
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 18-601
Cow position:
Alignm length: 622
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 178

Conread position: 18-642
Cow position:
Alignm length: 677
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 303

Conread position: 18-643
Cow position:
Alignm length: 683
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 299

Conread position: 20-431
Cow position:
Alignm length: 429
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 173

Conread position: 21-418
Cow position:
Alignm length: 412
Alignm identity: 273
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 103, 23

Conread position: 21-565
Cow position:
Alignm length: 587
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 295

Conread position: 43-642
Cow position:
Alignm length: 636
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 56-601
Cow position:
Alignm length: 594
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 335

Conread position: 67-336
Cow position:
Alignm length: 278
Alignm identity: 190
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 20

Conread position: 67-552
Cow position:
Alignm length: 521
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 149

Conread position: 67-606
Cow position:
Alignm length: 573
Alignm identity: 372
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 45

Conread position: 67-643
Cow position:
Alignm length: 615
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 237

Conread position: 68-643
Cow position:
Alignm length: 629
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 291

Conread position: 69-340
Cow position:
Alignm length: 293
Alignm identity: 210
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 80, 211

Conread position: 69-340
Cow position:
Alignm length: 292
Alignm identity: 210
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 74, 0

Conread position: 69-370
Cow position:
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 184

Conread position: 69-375
Cow position:
Alignm length: 325
Alignm identity: 232
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 74, 189

Conread position: 69-595
Cow position:
Alignm length: 560
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 246

Conread position: 69-601
Cow position:
Alignm length: 563
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 24

Conread position: 69-642
Cow position:
Alignm length: 616
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 289

Conread position: 72-601
Cow position:
Alignm length: 553
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 193

Conread position: 73-320
Cow position:
Alignm length: 259
Alignm identity: 173
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 62, 48

Conread position: 73-381
Cow position:
Alignm length: 321
Alignm identity: 230
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 76, 89

Conread position: 73-443
Cow position:
Alignm length: 397
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 179

Conread position: 73-452
Cow position:
Alignm length: 405
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 256

Conread position: 73-514
Cow position:
Alignm length: 479
Alignm identity: 320
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 33, 63

Conread position: 73-561
Cow position:
Alignm length: 519
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 9

Conread position: 73-575
Cow position:
Alignm length: 527
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 98

Conread position: 73-599
Cow position:
Alignm length: 554
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 220

Conread position: 73-601
Cow position:
Alignm length: 551
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 283

Conread position: 73-601
Cow position:
Alignm length: 560
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 238

Conread position: 73-601
Cow position:
Alignm length: 578
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 291

Conread position: 73-601
Cow position:
Alignm length: 550
Alignm identity: 350
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 41, 98

Conread position: 73-601
Cow position:
Alignm length: 551
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 134

Conread position: 73-603
Cow position:
Alignm length: 556
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 101

Conread position: 73-608
Cow position:
Alignm length: 571
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 199

Conread position: 73-614
Cow position:
Alignm length: 567
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 281

Conread position: 73-643
Cow position:
Alignm length: 617
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 242

Conread position: 73-643
Cow position:
Alignm length: 591
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 50

Conread position: 74-357
Cow position:
Alignm length: 298
Alignm identity: 197
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 242

Conread position: 74-493
Cow position:
Alignm length: 432
Alignm identity: 274
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 40, 46

Conread position: 75-504
Cow position:
Alignm length: 455
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 35

Conread position: 77-375
Cow position:
Alignm length: 316
Alignm identity: 217
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 69, 124

Conread position: 77-601
Cow position:
Alignm length: 562
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 202

Conread position: 77-601
Cow position:
Alignm length: 558
Alignm identity: 363
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 76, 282

Conread position: 77-601
Cow position:
Alignm length: 540
Alignm identity: 343
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 104, 190

Conread position: 77-603
Cow position:
Alignm length: 554
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 284

Conread position: 77-642
Cow position:
Alignm length: 638
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 16

Conread position: 84-601
Cow position:
Alignm length: 537
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 97

Conread position: 85-586
Cow position:
Alignm length: 525
Alignm identity: 328
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 27

Conread position: 85-608
Cow position:
Alignm length: 558
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 274

Conread position: 89-601
Cow position:
Alignm length: 558
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 172

Conread position: 89-602
Cow position:
Alignm length: 537
Alignm identity: 354
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 36, 107

Conread position: 90-422
Cow position:
Alignm length: 357
Alignm identity: 252
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 59, 269

Conread position: 93-423
Cow position:
Alignm length: 348
Alignm identity: 232
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 58, 151

Conread position: 104-549
Cow position:
Alignm length: 474
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 206

Conread position: 117-563
Cow position:
Alignm length: 469
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 187

Conread position: 118-614
Cow position:
Alignm length: 524
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 11

Conread position: 131-630
Cow position:
Alignm length: 522
Alignm identity: 339
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 8, 32

Conread position: 134-335
Cow position:
Alignm length: 218
Alignm identity: 156
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 136-636
Cow position:
Alignm length: 530
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 215

Conread position: 144-411
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 26, 209

Conread position: 157-326
Cow position:
Alignm length: 172
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 22, 29

Conread position: 157-642
Cow position:
Alignm length: 507
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 20

Conread position: 161-635
Cow position:
Alignm length: 496
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 187

Conread position: 162-601
Cow position:
Alignm length: 474
Alignm identity: 308
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 66, 189

Conread position: 163-601
Cow position:
Alignm length: 455
Alignm identity: 315
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 60, 16

Conread position: 164-500
Cow position:
Alignm length: 346
Alignm identity: 226
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 169, 74

Conread position: 164-643
Cow position:
Alignm length: 511
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 7

Conread position: 165-643
Cow position:
Alignm length: 512
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 206

Conread position: 167-626
Cow position:
Alignm length: 481
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 60

Conread position: 170-564
Cow position:
Alignm length: 409
Alignm identity: 269
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 66, 14

Conread position: 171-413
Cow position:
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 157

Conread position: 177-576
Cow position:
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 13

Conread position: 181-601
Cow position:
Alignm length: 442
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 175

Conread position: 181-614
Cow position:
Alignm length: 458
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 187

Conread position: 186-643
Cow position:
Alignm length: 489
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 180

Conread position: 187-641
Cow position:
Alignm length: 486
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 98

Conread position: 188-601
Cow position:
Alignm length: 433
Alignm identity: 277
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 8, 161

Conread position: 194-601
Cow position:
Alignm length: 428
Alignm identity: 286
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 40, 20

Conread position: 215-601
Cow position:
Alignm length: 398
Alignm identity: 253
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 26

Conread position: 216-600
Cow position:
Alignm length: 407
Alignm identity: 259
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 88

Conread position: 216-601
Cow position:
Alignm length: 404
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 45

Conread position: 216-601
Cow position:
Alignm length: 405
Alignm identity: 270
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 21, 48

Conread position: 223-557
Cow position:
Alignm length: 356
Alignm identity: 250
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 174, 16

Conread position: 223-580
Cow position:
Alignm length: 371
Alignm identity: 249
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 166, 16

Conread position: 244-601
Cow position:
Alignm length: 370
Alignm identity: 250
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 66, 101

Conread position: 259-575
Cow position:
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 83

Conread position: 260-482
Cow position:
Alignm length: 228
Alignm identity: 160
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 129, 14

Conread position: 266-601
Cow position:
Alignm length: 350
Alignm identity: 244
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 46, 61

Conread position: 274-644
Cow position:
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 69

Conread position: 275-637
Cow position:
Alignm length: 381
Alignm identity: 256
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 231, 16

Conread position: 298-504
Cow position:
Alignm length: 213
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 36, 63

Conread position: 299-642
Cow position:
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 61

Conread position: 328-643
Cow position:
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 20

Conread position: 330-642
Cow position:
Alignm length: 324
Alignm identity: 223
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 62, 30

Conread position: 339-536
Cow position:
Alignm length: 208
Alignm identity: 152
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 81, 26

Conread position: 349-642
Cow position:
Alignm length: 320
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 11

Conread position: 356-602
Cow position:
Alignm length: 260
Alignm identity: 180
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 64, 21

Conread position: 396-596
Cow position:
Alignm length: 205
Alignm identity: 160
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 12, 168

Conread position: 396-601
Cow position:
Alignm length: 214
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 25, 159

Conread position: 410-642
Cow position:
Alignm length: 252
Alignm identity: 185
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 96, 0

Conread position: 410-642
Cow position:
Alignm length: 242
Alignm identity: 171
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 95, 194

Conread position: 420-598
Cow position:
Alignm length: 181
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 172

Conread position: 420-643
Cow position:
Alignm length: 247
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 426-642
Cow position:
Alignm length: 236
Alignm identity: 169
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 128

Conread position: 432-601
Cow position:
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 0

Conread position: 434-631
Cow position:
Alignm length: 209
Alignm identity: 156
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 169, 71

Show alignments to all cow chromosomes.