Cow genome map

Conread name: Ss1.1-rspc033_l13.5

Conread position: 3-463
Cow position:
Alignm length: 496
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 327

Conread position: 7-642
Cow position:
Alignm length: 688
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 361

Conread position: 12-642
Cow position:
Alignm length: 682
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 110

Conread position: 14-485
Cow position:
Alignm length: 498
Alignm identity: 322
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 27, 147

Conread position: 16-504
Cow position:
Alignm length: 505
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 342

Conread position: 16-504
Cow position:
Alignm length: 507
Alignm identity: 324
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 42, 55

Conread position: 16-580
Cow position:
Alignm length: 612
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 317

Conread position: 16-601
Cow position:
Alignm length: 597
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 40

Conread position: 16-601
Cow position:
Alignm length: 610
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 58

Conread position: 16-603
Cow position:
Alignm length: 626
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 347

Conread position: 16-637
Cow position:
Alignm length: 662
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 8

Conread position: 16-642
Cow position:
Alignm length: 672
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 100

Conread position: 16-644
Cow position:
Alignm length: 673
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 278

Conread position: 17-601
Cow position:
Alignm length: 633
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 215

Conread position: 17-643
Cow position:
Alignm length: 679
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 350

Conread position: 17-643
Cow position:
Alignm length: 676
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 351

Conread position: 17-643
Cow position:
Alignm length: 678
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 348

Conread position: 18-165
Cow position:
Alignm length: 153
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 6

Conread position: 18-601
Cow position:
Alignm length: 631
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 316

Conread position: 18-643
Cow position:
Alignm length: 670
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 6

Conread position: 19-423
Cow position:
Alignm length: 422
Alignm identity: 288
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 126, 21

Conread position: 19-570
Cow position:
Alignm length: 583
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 246

Conread position: 20-483
Cow position:
Alignm length: 489
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 202

Conread position: 20-637
Cow position:
Alignm length: 660
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 175

Conread position: 20-642
Cow position:
Alignm length: 677
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 63

Conread position: 24-489
Cow position:
Alignm length: 501
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 201

Conread position: 24-509
Cow position:
Alignm length: 498
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 34

Conread position: 28-599
Cow position:
Alignm length: 593
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 28

Conread position: 65-415
Cow position:
Alignm length: 369
Alignm identity: 255
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 54, 47

Conread position: 66-434
Cow position:
Alignm length: 385
Alignm identity: 269
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 77, 138

Conread position: 67-315
Cow position:
Alignm length: 262
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 152

Conread position: 67-415
Cow position:
Alignm length: 374
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 293

Conread position: 67-588
Cow position:
Alignm length: 552
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 55

Conread position: 69-282
Cow position:
Alignm length: 234
Alignm identity: 166
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 69-357
Cow position:
Alignm length: 309
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 290

Conread position: 69-500
Cow position:
Alignm length: 450
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 141

Conread position: 69-575
Cow position:
Alignm length: 522
Alignm identity: 330
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 35, 44

Conread position: 69-601
Cow position:
Alignm length: 570
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 296

Conread position: 69-601
Cow position:
Alignm length: 567
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 290

Conread position: 69-601
Cow position:
Alignm length: 562
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 151

Conread position: 69-603
Cow position:
Alignm length: 573
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 23

Conread position: 69-642
Cow position:
Alignm length: 632
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 303

Conread position: 69-642
Cow position:
Alignm length: 622
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 294

Conread position: 69-642
Cow position:
Alignm length: 622
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 293

Conread position: 70-618
Cow position:
Alignm length: 569
Alignm identity: 381
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 76, 178

Conread position: 70-632
Cow position:
Alignm length: 608
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 96

Conread position: 72-601
Cow position:
Alignm length: 550
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 189

Conread position: 73-263
Cow position:
Alignm length: 211
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 73-334
Cow position:
Alignm length: 268
Alignm identity: 185
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 42, 46

Conread position: 73-392
Cow position:
Alignm length: 333
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 299

Conread position: 73-423
Cow position:
Alignm length: 370
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 112

Conread position: 73-514
Cow position:
Alignm length: 469
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 207

Conread position: 73-556
Cow position:
Alignm length: 505
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 9

Conread position: 73-601
Cow position:
Alignm length: 555
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 193

Conread position: 73-601
Cow position:
Alignm length: 560
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 286

Conread position: 73-601
Cow position:
Alignm length: 561
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 242

Conread position: 73-642
Cow position:
Alignm length: 611
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 286

Conread position: 73-642
Cow position:
Alignm length: 616
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 290

Conread position: 73-642
Cow position:
Alignm length: 618
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 250

Conread position: 73-643
Cow position:
Alignm length: 619
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 292

Conread position: 73-643
Cow position:
Alignm length: 616
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 188

Conread position: 77-601
Cow position:
Alignm length: 558
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 284

Conread position: 77-642
Cow position:
Alignm length: 610
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 214

Conread position: 78-601
Cow position:
Alignm length: 554
Alignm identity: 363
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 68, 51

Conread position: 79-576
Cow position:
Alignm length: 521
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 160

Conread position: 79-599
Cow position:
Alignm length: 551
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 53

Conread position: 87-563
Cow position:
Alignm length: 496
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 34

Conread position: 87-642
Cow position:
Alignm length: 604
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 210

Conread position: 96-622
Cow position:
Alignm length: 549
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 125

Conread position: 134-514
Cow position:
Alignm length: 405
Alignm identity: 265
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 13, 203

Conread position: 143-601
Cow position:
Alignm length: 465
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 8

Conread position: 144-643
Cow position:
Alignm length: 537
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 38

Conread position: 162-600
Cow position:
Alignm length: 450
Alignm identity: 291
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 64, 32

Conread position: 167-528
Cow position:
Alignm length: 373
Alignm identity: 249
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 54, 61

Conread position: 171-482
Cow position:
Alignm length: 319
Alignm identity: 229
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 175

Conread position: 179-557
Cow position:
Alignm length: 400
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 188

Conread position: 181-601
Cow position:
Alignm length: 444
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 143

Conread position: 181-601
Cow position:
Alignm length: 443
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 121

Conread position: 182-490
Cow position:
Alignm length: 318
Alignm identity: 216
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 10, 54

Conread position: 188-475
Cow position:
Alignm length: 297
Alignm identity: 192
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 56, 27

Conread position: 188-586
Cow position:
Alignm length: 438
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 97

Conread position: 216-482
Cow position:
Alignm length: 278
Alignm identity: 192
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 27, 142

Conread position: 216-601
Cow position:
Alignm length: 401
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 132

Conread position: 222-643
Cow position:
Alignm length: 441
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 73

Conread position: 225-601
Cow position:
Alignm length: 390
Alignm identity: 250
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 18, 117

Conread position: 241-602
Cow position:
Alignm length: 370
Alignm identity: 238
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 9, 102

Conread position: 244-642
Cow position:
Alignm length: 429
Alignm identity: 281
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 138, 41

Conread position: 256-477
Cow position:
Alignm length: 227
Alignm identity: 168
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 134, 81

Conread position: 256-569
Cow position:
Alignm length: 324
Alignm identity: 213
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 133, 100

Conread position: 256-601
Cow position:
Alignm length: 361
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 88

Conread position: 256-613
Cow position:
Alignm length: 373
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 24

Conread position: 256-642
Cow position:
Alignm length: 413
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 86

Conread position: 274-602
Cow position:
Alignm length: 339
Alignm identity: 227
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 225, 37

Conread position: 323-601
Cow position:
Alignm length: 292
Alignm identity: 202
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 53, 32

Conread position: 342-601
Cow position:
Alignm length: 270
Alignm identity: 194
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 46, 18

Conread position: 356-642
Cow position:
Alignm length: 310
Alignm identity: 227
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 68, 9

Conread position: 360-643
Cow position:
Alignm length: 307
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 0

Conread position: 368-599
Cow position:
Alignm length: 241
Alignm identity: 160
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 384-642
Cow position:
Alignm length: 282
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 7, 0

Conread position: 389-642
Cow position:
Alignm length: 276
Alignm identity: 208
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 31, 0

Conread position: 410-643
Cow position:
Alignm length: 252
Alignm identity: 185
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 93, 0

Conread position: 419-642
Cow position:
Alignm length: 243
Alignm identity: 180
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 84, 0

Conread position: 428-601
Cow position:
Alignm length: 181
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 428-644
Cow position:
Alignm length: 235
Alignm identity: 180
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 78, 0

Conread position: 459-601
Cow position:
Alignm length: 150
Alignm identity: 117
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 45, 122

Conread position: 459-642
Cow position:
Alignm length: 202
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 462-601
Cow position:
Alignm length: 147
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 465-601
Cow position:
Alignm length: 144
Alignm identity: 118
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 41, 16

Conread position: 468-642
Cow position:
Alignm length: 194
Alignm identity: 144
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 502-620
Cow position:
Alignm length: 121
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 106, 58

Show alignments to all cow chromosomes.