Cow genome map


           Conread name:
           Ss1.1-rspc033_l13.5
        

               Conread position:
               7-643
               

               Cow position:
               
               

               Alignm length:
               659
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 66
               

               Conread position:
               12-603
               

               Cow position:
               
               

               Alignm length:
               626
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 56
               

               Conread position:
               15-602
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 23
               

               Conread position:
               16-434
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 372
               

               Conread position:
               16-474
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 179
               

               Conread position:
               16-578
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 196
               

               Conread position:
               16-600
               

               Cow position:
               
               

               Alignm length:
               625
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 347
               

               Conread position:
               16-601
               

               Cow position:
               
               

               Alignm length:
               627
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 348
               

               Conread position:
               17-601
               

               Cow position:
               
               

               Alignm length:
               617
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 46
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               680
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 349
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               673
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 237
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               674
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 104
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               688
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 355
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               683
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 373
               

               Conread position:
               18-642
               

               Cow position:
               
               

               Alignm length:
               649
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 125
               

               Conread position:
               18-643
               

               Cow position:
               
               

               Alignm length:
               677
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 347
               

               Conread position:
               19-643
               

               Cow position:
               
               

               Alignm length:
               670
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               26-604
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 312
               

               Conread position:
               65-584
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 22
               

               Conread position:
               66-599
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               356
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               11, 51
               

               Conread position:
               67-418
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               269
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               76, 66
               

               Conread position:
               69-320
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               87, 63
               

               Conread position:
               69-601
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 105
               

               Conread position:
               70-344
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               73, 21
               

               Conread position:
               70-632
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 309
               

               Conread position:
               72-498
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 280
               

               Conread position:
               73-354
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               41, 47
               

               Conread position:
               73-392
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 243
               

               Conread position:
               73-406
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               85, 22
               

               Conread position:
               73-414
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 171
               

               Conread position:
               73-442
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 287
               

               Conread position:
               73-504
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 283
               

               Conread position:
               73-529
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               336
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               51, 141
               

               Conread position:
               73-600
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 290
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               371
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               41, 46
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               361
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               70, 149
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 288
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 93
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 307
               

               Conread position:
               73-642
               

               Cow position:
               
               

               Alignm length:
               615
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 49
               

               Conread position:
               73-643
               

               Cow position:
               
               

               Alignm length:
               614
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 261
               

               Conread position:
               75-341
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               68, 111
               

               Conread position:
               75-523
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               295
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               72, 147
               

               Conread position:
               77-338
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               37, 42
               

               Conread position:
               78-375
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               104, 40
               

               Conread position:
               88-600
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               348
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               33, 53
               

               Conread position:
               92-344
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               41, 228
               

               Conread position:
               96-643
               

               Cow position:
               
               

               Alignm length:
               593
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 263
               

               Conread position:
               105-601
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 111
               

               Conread position:
               122-457
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               42, 220
               

               Conread position:
               123-596
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               34, 129
               

               Conread position:
               128-601
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 10
               

               Conread position:
               142-504
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               263
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               75, 28
               

               Conread position:
               142-563
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 212
               

               Conread position:
               143-601
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               306
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               25, 89
               

               Conread position:
               146-573
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 42
               

               Conread position:
               146-642
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 43
               

               Conread position:
               161-426
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               65, 24
               

               Conread position:
               163-332
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               164-465
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               79, 167
               

               Conread position:
               164-504
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 158
               

               Conread position:
               179-501
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               239, 43
               

               Conread position:
               179-601
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               305
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               42, 27
               

               Conread position:
               179-638
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 163
               

               Conread position:
               181-601
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               278
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               36, 148
               

               Conread position:
               182-601
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 165
               

               Conread position:
               197-641
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               300
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               190, 15
               

               Conread position:
               199-370
               

               Cow position:
               
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               18, 10
               

               Conread position:
               203-628
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 170
               

               Conread position:
               222-504
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               14, 74
               

               Conread position:
               223-504
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               11, 82
               

               Conread position:
               230-586
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               17, 114
               

               Conread position:
               243-601
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 80
               

               Conread position:
               245-603
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 94
               

               Conread position:
               256-600
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               82, 143
               

               Conread position:
               258-526
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               153, 77
               

               Conread position:
               287-642
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 55
               

               Conread position:
               306-601
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 44
               

               Conread position:
               307-643
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 35
               

               Conread position:
               385-642
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               396-643
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               201
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               30, 172
               

               Conread position:
               404-642
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               17, 162
               

               Conread position:
               405-601
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               87, 196
               

               Conread position:
               417-643
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               13, 94
               

               Conread position:
               420-632
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               14, 146
               

               Conread position:
               449-642
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               55, 0
               
Show alignments to all cow chromosomes.