Cow genome map
| Conread name: | Ss1.1-rspc033_l13.5 |
| Conread position: | 1-601 |
| Cow position: | chr19:39667342-39666724 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 1-638 |
| Cow position: | chr19:1588053-1587367 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 6-601 |
| Cow position: | chr19:161940-161327 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 7-446 |
| Cow position: | chr19:256452-256924 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 316 |
| Conread position: | 7-601 |
| Cow position: | chr19:773790-774426 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 365 |
| Conread position: | 8-643 |
| Cow position: | chr19:9706972-9706293 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 161 |
| Conread position: | 16-244 |
| Cow position: | chr19:48861005-48860764 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 16-282 |
| Cow position: | chr19:135593-135308 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 239 |
| Conread position: | 16-503 |
| Cow position: | chr19:40816314-40815794 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 366 |
| Conread position: | 16-601 |
| Cow position: | chr19:28594750-28595359 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 16-642 |
| Cow position: | chr19:5900312-5899635 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 354 |
| Conread position: | 17-392 |
| Cow position: | chr19:7489550-7489953 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 17-601 |
| Cow position: | chr19:4386813-4387423 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 213 |
| Conread position: | 17-601 |
| Cow position: | chr19:12774314-12774926 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 131 |
| Conread position: | 17-601 |
| Cow position: | chr19:33874625-33875233 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 223 |
| Conread position: | 17-643 |
| Cow position: | chr19:173456-174134 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 17-643 |
| Cow position: | chr19:892423-891764 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 17-643 |
| Cow position: | chr19:40851250-40850593 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 338 |
| Conread position: | 18-482 |
| Cow position: | chr19:50723754-50724243 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 148 |
| Conread position: | 24-643 |
| Cow position: | chr19:28405495-28404858 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 103 |
| Conread position: | 27-392 |
| Cow position: | chr19:1489778-1489397 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 13 |
| Conread position: | 68-642 |
| Cow position: | chr19:40886464-40885868 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 112 |
| Conread position: | 69-375 |
| Cow position: | chr19:42583377-42583089 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 69-396 |
| Cow position: | chr19:33527372-33527719 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 290 |
| Conread position: | 69-423 |
| Cow position: | chr19:43144973-43145342 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 69-637 |
| Cow position: | chr19:20105986-20106594 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 192 |
| Conread position: | 69-643 |
| Cow position: | chr19:376461-375848 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 69-643 |
| Cow position: | chr19:32204555-32205130 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 16 |
| Conread position: | 69-643 |
| Cow position: | chr19:39391769-39392384 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 254 |
| Conread position: | 70-375 |
| Cow position: | chr19:33653465-33653156 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 72, 271 |
| Conread position: | 70-551 |
| Cow position: | chr19:30756480-30756984 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 221 |
| Conread position: | 73-504 |
| Cow position: | chr19:32210811-32210357 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 276 |
| Conread position: | 73-561 |
| Cow position: | chr19:39563-40078 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 211 |
| Conread position: | 73-564 |
| Cow position: | chr19:35384348-35383830 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 340 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 94, 232 |
| Conread position: | 73-604 |
| Cow position: | chr19:342505-343074 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 73-626 |
| Cow position: | chr19:27036338-27035797 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 373 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 73-642 |
| Cow position: | chr19:7343332-7343942 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 288 |
| Conread position: | 73-642 |
| Cow position: | chr19:52150421-52149807 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 290 |
| Conread position: | 73-643 |
| Cow position: | chr19:5730135-5730718 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 68 |
| Conread position: | 73-643 |
| Cow position: | chr19:28580398-28579791 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 73-643 |
| Cow position: | chr19:39184277-39183669 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 88 |
| Conread position: | 74-386 |
| Cow position: | chr19:6713463-6713147 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 221 |
| Conread position: | 74-603 |
| Cow position: | chr19:438175-437615 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 188 |
| Conread position: | 75-333 |
| Cow position: | chr19:44031646-44031918 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 76-643 |
| Cow position: | chr19:205771-206387 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 284 |
| Conread position: | 78-374 |
| Cow position: | chr19:29141205-29141515 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 78-642 |
| Cow position: | chr19:788674-789264 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 384 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 96-643 |
| Cow position: | chr19:33942857-33943442 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 218 |
| Conread position: | 119-601 |
| Cow position: | chr19:264959-265474 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 156 |
| Conread position: | 146-514 |
| Cow position: | chr19:19178786-19178411 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 157-642 |
| Cow position: | chr19:16319270-16318754 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 192 |
| Conread position: | 160-500 |
| Cow position: | chr19:32181684-32181345 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 163-603 |
| Cow position: | chr19:5249363-5248920 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 123 |
| Conread position: | 167-475 |
| Cow position: | chr19:9552809-9552485 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 167-563 |
| Cow position: | chr19:40794870-40794462 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 50, 75 |
| Conread position: | 168-598 |
| Cow position: | chr19:3428983-3429420 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 171-643 |
| Cow position: | chr19:2272729-2272245 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 182-601 |
| Cow position: | chr19:32140000-32139572 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 165 |
| Conread position: | 187-599 |
| Cow position: | chr19:39096846-39097235 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 188-632 |
| Cow position: | chr19:166738-166266 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 218-601 |
| Cow position: | chr19:5678356-5677978 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 241-504 |
| Cow position: | chr19:23400774-23400523 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 160, 98 |
| Conread position: | 244-598 |
| Cow position: | chr19:35107326-35106978 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 149, 33 |
| Conread position: | 249-563 |
| Cow position: | chr19:16128617-16128938 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 127, 82 |
| Conread position: | 274-538 |
| Cow position: | chr19:4301552-4301810 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 82 |
| Conread position: | 274-643 |
| Cow position: | chr19:1583735-1584128 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 6 |
| Conread position: | 280-601 |
| Cow position: | chr19:48860270-48859932 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 298-586 |
| Cow position: | chr19:39985281-39984989 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 298-642 |
| Cow position: | chr19:28367458-28367820 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 92, 22 |
| Conread position: | 328-601 |
| Cow position: | chr19:40471154-40470877 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 178, 27 |
| Conread position: | 358-601 |
| Cow position: | chr19:42582887-42582635 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 379-642 |
| Cow position: | chr19:30559777-30560060 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 48, 200 |
| Conread position: | 388-600 |
| Cow position: | chr19:33596169-33595947 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 396-643 |
| Cow position: | chr19:3139577-3139842 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 414-603 |
| Cow position: | chr19:30453726-30453536 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 91, 15 |
| Conread position: | 421-601 |
| Cow position: | chr19:547954-547759 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 429-642 |
| Cow position: | chr19:43146301-43146534 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 443-601 |
| Cow position: | chr19:256944-257107 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 123 |
| Conread position: | 464-643 |
| Cow position: | chr19:32468581-32468778 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.