Cow genome map
| Conread name: | Ss1.1-rspc033_l13.5 |
| Conread position: | 5-601 |
| Cow position: | chr20:5466184-5466792 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 185 |
| Conread position: | 12-643 |
| Cow position: | chr20:15293144-15293817 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 16-315 |
| Cow position: | chr20:13663886-13663563 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 16-338 |
| Cow position: | chr20:22210208-22210543 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 16-423 |
| Cow position: | chr20:18314187-18313777 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 16-426 |
| Cow position: | chr20:27338368-27338797 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 60 |
| Conread position: | 16-460 |
| Cow position: | chr20:9520975-9520517 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 348 |
| Conread position: | 16-592 |
| Cow position: | chr20:21395090-21395688 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 16-601 |
| Cow position: | chr20:9344126-9344729 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 237 |
| Conread position: | 16-643 |
| Cow position: | chr20:28564424-28563740 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 127 |
| Conread position: | 16-644 |
| Cow position: | chr20:15096725-15096057 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 125 |
| Conread position: | 17-528 |
| Cow position: | chr20:12569681-12570218 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 179 |
| Conread position: | 17-569 |
| Cow position: | chr20:27870363-27870959 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 354 |
| Conread position: | 17-608 |
| Cow position: | chr20:23800044-23800674 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 17-641 |
| Cow position: | chr20:29949677-29950359 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 17-643 |
| Cow position: | chr20:13764064-13764732 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 17-643 |
| Cow position: | chr20:23468503-23467832 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 306 |
| Conread position: | 19-290 |
| Cow position: | chr20:8216677-8216971 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 185 |
| Conread position: | 24-316 |
| Cow position: | chr20:14869791-14869479 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 268 |
| Conread position: | 26-601 |
| Cow position: | chr20:20753615-20753036 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 93 |
| Conread position: | 65-642 |
| Cow position: | chr20:32120551-32121148 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 66-621 |
| Cow position: | chr20:13787276-13787842 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 67-297 |
| Cow position: | chr20:13678828-13678578 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 67-318 |
| Cow position: | chr20:5229296-5229028 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 67-482 |
| Cow position: | chr20:18323718-18323309 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 107, 62 |
| Conread position: | 67-504 |
| Cow position: | chr20:14742527-14742976 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 67-606 |
| Cow position: | chr20:30686791-30687373 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 294 |
| Conread position: | 68-465 |
| Cow position: | chr20:19355986-19356398 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 192 |
| Conread position: | 69-320 |
| Cow position: | chr20:13433154-13432891 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 154, 110 |
| Conread position: | 69-581 |
| Cow position: | chr20:13499332-13499870 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 246 |
| Conread position: | 69-595 |
| Cow position: | chr20:18967719-18968254 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 370 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 77, 140 |
| Conread position: | 69-603 |
| Cow position: | chr20:30429490-30430057 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 290 |
| Conread position: | 69-642 |
| Cow position: | chr20:823991-824603 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 245 |
| Conread position: | 73-387 |
| Cow position: | chr20:19340864-19341186 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 73-580 |
| Cow position: | chr20:871783-871262 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 285 |
| Conread position: | 73-588 |
| Cow position: | chr20:10854114-10853582 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 264 |
| Conread position: | 73-593 |
| Cow position: | chr20:16178543-16177973 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 288 |
| Conread position: | 73-601 |
| Cow position: | chr20:25849597-25849047 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 295 |
| Conread position: | 73-642 |
| Cow position: | chr20:15066693-15067283 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 223 |
| Conread position: | 73-642 |
| Cow position: | chr20:19439139-19439752 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 289 |
| Conread position: | 73-643 |
| Cow position: | chr20:5536161-5536780 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 292 |
| Conread position: | 73-643 |
| Cow position: | chr20:21915855-21916473 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 294 |
| Conread position: | 73-644 |
| Cow position: | chr20:17660518-17659907 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 285 |
| Conread position: | 76-299 |
| Cow position: | chr20:5791566-5791794 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 75 |
| Conread position: | 77-601 |
| Cow position: | chr20:37581443-37581948 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 355 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 87, 55 |
| Conread position: | 77-643 |
| Cow position: | chr20:9546897-9547482 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 168 |
| Conread position: | 78-601 |
| Cow position: | chr20:5937913-5937386 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 349 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 139 |
| Conread position: | 84-601 |
| Cow position: | chr20:24615656-24615128 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 247 |
| Conread position: | 112-588 |
| Cow position: | chr20:12437158-12436651 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 266 |
| Conread position: | 130-514 |
| Cow position: | chr20:13769147-13769536 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 139 |
| Conread position: | 157-601 |
| Cow position: | chr20:926086-925625 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 302 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 104, 66 |
| Conread position: | 157-642 |
| Cow position: | chr20:26054379-26053855 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 201 |
| Conread position: | 161-446 |
| Cow position: | chr20:22698322-22698599 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 179-601 |
| Cow position: | chr20:41364295-41363860 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 142 |
| Conread position: | 186-595 |
| Cow position: | chr20:8972829-8972401 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 161 |
| Conread position: | 187-643 |
| Cow position: | chr20:28162180-28162661 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 157 |
| Conread position: | 220-424 |
| Cow position: | chr20:14869186-14868989 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 260-643 |
| Cow position: | chr20:35126091-35126492 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 82 |
| Conread position: | 266-601 |
| Cow position: | chr20:21717861-21718217 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 285-643 |
| Cow position: | chr20:13793484-13793853 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 60 |
| Conread position: | 295-504 |
| Cow position: | chr20:30386614-30386400 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 295-582 |
| Cow position: | chr20:31497953-31497662 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 46 |
| Conread position: | 298-642 |
| Cow position: | chr20:20441483-20441115 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 304-601 |
| Cow position: | chr20:13678366-13678057 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 23 |
| Conread position: | 319-642 |
| Cow position: | chr20:35018437-35018767 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 70, 36 |
| Conread position: | 328-580 |
| Cow position: | chr20:7573068-7572807 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 358-642 |
| Cow position: | chr20:25899219-25899524 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 366-601 |
| Cow position: | chr20:12041961-12042205 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 383-599 |
| Cow position: | chr20:19341382-19341607 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 106 |
| Conread position: | 388-643 |
| Cow position: | chr20:10101457-10101186 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 406-644 |
| Cow position: | chr20:19214557-19214805 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 208 |
| Conread position: | 430-601 |
| Cow position: | chr20:9533406-9533577 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 115, 89 |
Show alignments to all cow chromosomes.