Cow genome map


           Conread name:
           Ss1.1-rspc033_l13.5
        

               Conread position:
               1-642
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 17
               

               Conread position:
               2-598
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               390
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               13, 53
               

               Conread position:
               5-642
               

               Cow position:
               
               

               Alignm length:
               688
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 368
               

               Conread position:
               6-599
               

               Cow position:
               
               

               Alignm length:
               609
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 10
               

               Conread position:
               16-414
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 110
               

               Conread position:
               16-519
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               364
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               46, 316
               

               Conread position:
               16-549
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 40
               

               Conread position:
               16-601
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 107
               

               Conread position:
               16-643
               

               Cow position:
               
               

               Alignm length:
               682
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 89
               

               Conread position:
               17-204
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               17-267
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               17-456
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 260
               

               Conread position:
               17-523
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 170
               

               Conread position:
               17-601
               

               Cow position:
               
               

               Alignm length:
               620
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 85
               

               Conread position:
               17-601
               

               Cow position:
               
               

               Alignm length:
               625
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 348
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               684
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 354
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 293
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               681
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 351
               

               Conread position:
               17-643
               

               Cow position:
               
               

               Alignm length:
               683
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 350
               

               Conread position:
               18-562
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 201
               

               Conread position:
               18-643
               

               Cow position:
               
               

               Alignm length:
               679
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 348
               

               Conread position:
               19-601
               

               Cow position:
               
               

               Alignm length:
               623
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 348
               

               Conread position:
               19-643
               

               Cow position:
               
               

               Alignm length:
               661
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 89
               

               Conread position:
               24-644
               

               Cow position:
               
               

               Alignm length:
               653
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 211
               

               Conread position:
               65-462
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               96, 65
               

               Conread position:
               67-601
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 14
               

               Conread position:
               67-601
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 17
               

               Conread position:
               68-629
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               375
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               75, 44
               

               Conread position:
               69-288
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               69-293
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               77, 24
               

               Conread position:
               69-300
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               69-468
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 25
               

               Conread position:
               69-601
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 43
               

               Conread position:
               69-601
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 259
               

               Conread position:
               69-632
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 294
               

               Conread position:
               69-642
               

               Cow position:
               
               

               Alignm length:
               619
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 310
               

               Conread position:
               73-422
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               24, 40
               

               Conread position:
               73-492
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               271
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               43, 38
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 29
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               351
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               73, 206
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               360
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               39, 175
               

               Conread position:
               73-601
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 305
               

               Conread position:
               73-632
               

               Cow position:
               
               

               Alignm length:
               596
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 284
               

               Conread position:
               73-643
               

               Cow position:
               
               

               Alignm length:
               611
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 282
               

               Conread position:
               73-643
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 29
               

               Conread position:
               73-643
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 53
               

               Conread position:
               73-643
               

               Cow position:
               
               

               Alignm length:
               627
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 304
               

               Conread position:
               74-453
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               69, 44
               

               Conread position:
               74-637
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 28
               

               Conread position:
               74-643
               

               Cow position:
               
               

               Alignm length:
               616
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 60
               

               Conread position:
               75-468
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 190
               

               Conread position:
               75-601
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 150
               

               Conread position:
               75-638
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 282
               

               Conread position:
               76-599
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 283
               

               Conread position:
               77-423
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 280
               

               Conread position:
               77-432
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 181
               

               Conread position:
               77-494
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 282
               

               Conread position:
               87-354
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               28, 154
               

               Conread position:
               87-573
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 55
               

               Conread position:
               89-642
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 281
               

               Conread position:
               95-517
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               280
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               17, 24
               

               Conread position:
               96-334
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               61, 23
               

               Conread position:
               97-601
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 165
               

               Conread position:
               97-601
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 263
               

               Conread position:
               125-601
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               328
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               43, 135
               

               Conread position:
               127-629
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 186
               

               Conread position:
               140-489
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               45, 10
               

               Conread position:
               146-643
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 207
               

               Conread position:
               157-601
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 193
               

               Conread position:
               162-601
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 182
               

               Conread position:
               163-549
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               281
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               17, 41
               

               Conread position:
               163-601
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 17
               

               Conread position:
               167-601
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 178
               

               Conread position:
               167-601
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               311
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               61, 70
               

               Conread position:
               169-637
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 172
               

               Conread position:
               174-631
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 106
               

               Conread position:
               181-637
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 130
               

               Conread position:
               185-643
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 9
               

               Conread position:
               186-553
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               263
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               29, 160
               

               Conread position:
               187-601
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 80
               

               Conread position:
               188-636
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               303
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               46, 30
               

               Conread position:
               205-601
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 36
               

               Conread position:
               212-580
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               220-642
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 124
               

               Conread position:
               222-601
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               266
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               44, 22
               

               Conread position:
               223-601
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               264
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               18, 34
               

               Conread position:
               227-642
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 123
               

               Conread position:
               256-586
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 83
               

               Conread position:
               259-601
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               135, 83
               

               Conread position:
               264-601
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               14, 32
               

               Conread position:
               270-504
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               146, 61
               

               Conread position:
               279-602
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               110, 59
               

               Conread position:
               280-640
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               111, 32
               

               Conread position:
               282-633
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 60
               

               Conread position:
               287-602
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               106, 38
               

               Conread position:
               298-593
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               73, 23
               

               Conread position:
               309-530
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               119, 22
               

               Conread position:
               315-642
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               34, 69
               

               Conread position:
               331-636
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 29
               

               Conread position:
               349-643
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               228
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               41, 11
               

               Conread position:
               389-600
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               27, 174
               

               Conread position:
               390-593
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               30, 193
               

               Conread position:
               410-601
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               20, 92
               

               Conread position:
               430-600
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               433-643
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               170, 43
               

               Conread position:
               440-643
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               459-601
               

               Cow position:
               
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               50, 94
               
Show alignments to all cow chromosomes.