Cow genome map
| Conread name: | Ss1.1-rspc033_l13.5 |
| Conread position: | 7-336 |
| Cow position: | chr23:2576518-2576852 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 53 |
| Conread position: | 7-643 |
| Cow position: | chr23:22146221-22145533 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 361 |
| Conread position: | 8-407 |
| Cow position: | chr23:37716603-37717014 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 8-601 |
| Cow position: | chr23:13512199-13512794 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 353 |
| Conread position: | 16-415 |
| Cow position: | chr23:23282326-23282732 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 259 |
| Conread position: | 16-454 |
| Cow position: | chr23:14777860-14777401 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 46, 304 |
| Conread position: | 16-601 |
| Cow position: | chr23:14972876-14972235 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 267 |
| Conread position: | 16-601 |
| Cow position: | chr23:30237367-30238011 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 417 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 257 |
| Conread position: | 17-321 |
| Cow position: | chr23:14963946-14963622 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 17-485 |
| Cow position: | chr23:2342189-2342675 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 116 |
| Conread position: | 17-569 |
| Cow position: | chr23:22167771-22168328 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 17-632 |
| Cow position: | chr23:965393-964736 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 284 |
| Conread position: | 17-643 |
| Cow position: | chr23:2025980-2025308 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 17-643 |
| Cow position: | chr23:2794155-2793498 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 201 |
| Conread position: | 17-644 |
| Cow position: | chr23:15178176-15178836 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 17-647 |
| Cow position: | chr23:11779885-11780556 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 344 |
| Conread position: | 18-478 |
| Cow position: | chr23:21243638-21243147 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 19-395 |
| Cow position: | chr23:25682853-25682486 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 220 |
| Conread position: | 19-600 |
| Cow position: | chr23:16498137-16497534 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 227 |
| Conread position: | 19-601 |
| Cow position: | chr23:5873474-5872852 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 348 |
| Conread position: | 24-643 |
| Cow position: | chr23:36030270-36029611 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 27-644 |
| Cow position: | chr23:29451232-29450557 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 65-599 |
| Cow position: | chr23:14263020-14263566 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 273 |
| Conread position: | 67-601 |
| Cow position: | chr23:11714712-11714146 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 295 |
| Conread position: | 67-626 |
| Cow position: | chr23:15876410-15875823 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 69-309 |
| Cow position: | chr23:14923138-14922878 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 69-319 |
| Cow position: | chr23:38581875-38582118 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 45, 50 |
| Conread position: | 69-569 |
| Cow position: | chr23:4513629-4514171 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 300 |
| Conread position: | 69-580 |
| Cow position: | chr23:618309-617798 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 70-642 |
| Cow position: | chr23:41142068-41141454 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 73-254 |
| Cow position: | chr23:1957050-1957243 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 120 |
| Conread position: | 73-422 |
| Cow position: | chr23:3707290-3707652 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 212 |
| Conread position: | 73-429 |
| Cow position: | chr23:11077018-11076647 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 73-454 |
| Cow position: | chr23:19949426-19949021 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 286 |
| Conread position: | 73-486 |
| Cow position: | chr23:29402555-29402132 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 9 |
| Conread position: | 73-506 |
| Cow position: | chr23:4361189-4361608 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 73-580 |
| Cow position: | chr23:16614011-16613502 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 248 |
| Conread position: | 73-601 |
| Cow position: | chr23:16054943-16055491 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 182 |
| Conread position: | 73-601 |
| Cow position: | chr23:31648857-31648311 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 102 |
| Conread position: | 73-635 |
| Cow position: | chr23:28218585-28219198 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 289 |
| Conread position: | 73-642 |
| Cow position: | chr23:1022795-1022186 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 8 |
| Conread position: | 73-643 |
| Cow position: | chr23:3879920-3879313 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 271 |
| Conread position: | 73-643 |
| Cow position: | chr23:4889851-4890455 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 244 |
| Conread position: | 73-643 |
| Cow position: | chr23:15526732-15527353 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 73-643 |
| Cow position: | chr23:19490708-19491324 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 249 |
| Conread position: | 73-643 |
| Cow position: | chr23:20155048-20154454 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 67 |
| Conread position: | 74-436 |
| Cow position: | chr23:27400688-27401074 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 241 |
| Conread position: | 74-484 |
| Cow position: | chr23:2718477-2718909 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 25 |
| Conread position: | 74-643 |
| Cow position: | chr23:2759056-2759671 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 279 |
| Conread position: | 74-643 |
| Cow position: | chr23:4818188-4818793 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 241 |
| Conread position: | 74-644 |
| Cow position: | chr23:7045007-7044434 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 68 |
| Conread position: | 78-602 |
| Cow position: | chr23:14556001-14556530 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 342 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 84-601 |
| Cow position: | chr23:30563602-30564121 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 336 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 88-502 |
| Cow position: | chr23:38691668-38692105 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 182 |
| Conread position: | 88-583 |
| Cow position: | chr23:948652-948121 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 88-638 |
| Cow position: | chr23:21822101-21821560 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 106 |
| Conread position: | 117-642 |
| Cow position: | chr23:7314114-7314683 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 245 |
| Conread position: | 118-573 |
| Cow position: | chr23:8287185-8287630 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 129-642 |
| Cow position: | chr23:1012578-1012049 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 157-642 |
| Cow position: | chr23:23172037-23172549 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 190 |
| Conread position: | 163-379 |
| Cow position: | chr23:10718760-10718541 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 111 |
| Conread position: | 163-643 |
| Cow position: | chr23:4639325-4638825 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 166-601 |
| Cow position: | chr23:15218606-15218168 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 65 |
| Conread position: | 167-599 |
| Cow position: | chr23:28336806-28337238 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 135 |
| Conread position: | 182-336 |
| Cow position: | chr23:11997370-11997526 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 185-643 |
| Cow position: | chr23:38579006-38579444 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 194-599 |
| Cow position: | chr23:17878461-17878041 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 240-643 |
| Cow position: | chr23:31164152-31164574 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 85 |
| Conread position: | 245-600 |
| Cow position: | chr23:35273997-35274363 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 245-601 |
| Cow position: | chr23:1957520-1957880 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 115 |
| Conread position: | 246-643 |
| Cow position: | chr23:28304272-28304688 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 33 |
| Conread position: | 260-575 |
| Cow position: | chr23:26838188-26838510 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 133, 82 |
| Conread position: | 274-642 |
| Cow position: | chr23:32351381-32350989 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 285-433 |
| Cow position: | chr23:26159254-26159110 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 292-564 |
| Cow position: | chr23:4435051-4435336 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 98, 50 |
| Conread position: | 307-516 |
| Cow position: | chr23:6220565-6220774 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 82, 35 |
| Conread position: | 323-642 |
| Cow position: | chr23:608145-608485 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 342-643 |
| Cow position: | chr23:14961504-14961179 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 55, 18 |
| Conread position: | 351-573 |
| Cow position: | chr23:25677835-25677613 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 351-642 |
| Cow position: | chr23:2439826-2439516 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 155, 77 |
| Conread position: | 358-642 |
| Cow position: | chr23:38582123-38582399 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 35, 99 |
| Conread position: | 376-586 |
| Cow position: | chr23:23283010-23283232 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 410-601 |
| Cow position: | chr23:3707925-3708122 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 174 |
| Conread position: | 418-601 |
| Cow position: | chr23:1400675-1400489 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 88 |
| Conread position: | 421-601 |
| Cow position: | chr23:29478745-29478925 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 503-644 |
| Cow position: | chr23:1340180-1340029 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 141 |
Show alignments to all cow chromosomes.