Cow genome map

Conread name: Ss1.1-rspc033_l13.5

Conread position: 7-485
Cow position: chr24:6142264-6142756 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 23

Conread position: 7-601
Cow position: chr24:37199709-37199108 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 142

Conread position: 15-643
Cow position: chr24:14383434-14382767 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 7

Conread position: 16-602
Cow position: chr24:6659312-6658684 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 114

Conread position: 16-636
Cow position: chr24:19702685-19703342 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 291

Conread position: 16-637
Cow position: chr24:6130009-6130656 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 193

Conread position: 17-338
Cow position: chr24:37320401-37320074 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 233
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 43, 209

Conread position: 17-504
Cow position: chr24:6407223-6407738 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 324

Conread position: 17-643
Cow position: chr24:147424-146747 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 348

Conread position: 17-643
Cow position: chr24:4414344-4413693 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 274

Conread position: 17-643
Cow position: chr24:9545250-9545918 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 67

Conread position: 17-643
Cow position: chr24:12087393-12088062 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 246

Conread position: 17-643
Cow position: chr24:19834582-19835266 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 379

Conread position: 17-643
Cow position: chr24:29188478-29189148 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 308

Conread position: 18-335
Cow position: chr24:1450615-1450937 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 54, 80

Conread position: 18-423
Cow position: chr24:14278027-14277607 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 286
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 54, 346

Conread position: 18-471
Cow position: chr24:14389346-14388872 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 343

Conread position: 18-601
Cow position: chr24:17409666-17410268 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 110

Conread position: 18-603
Cow position: chr24:33934575-33935199 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 262

Conread position: 26-578
Cow position: chr24:14871122-14870550 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 95

Conread position: 66-580
Cow position: chr24:6675854-6676376 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 351
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 174, 10

Conread position: 66-599
Cow position: chr24:40470125-40469563 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 366
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 71, 15

Conread position: 67-293
Cow position: chr24:36558521-36558289 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 76, 180

Conread position: 67-598
Cow position: chr24:38638779-38639335 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 271

Conread position: 67-608
Cow position: chr24:7089723-7089184 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 75

Conread position: 69-423
Cow position: chr24:12163191-12163556 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 263
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 81, 236

Conread position: 69-504
Cow position: chr24:19640927-19641421 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 342
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 79, 18

Conread position: 69-523
Cow position: chr24:12699571-12699099 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 283

Conread position: 69-587
Cow position: chr24:44018754-44019304 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 293

Conread position: 69-601
Cow position: chr24:17370726-17370225 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 355
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 76, 87

Conread position: 69-601
Cow position: chr24:36298683-36299219 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 370
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 77, 61

Conread position: 69-642
Cow position: chr24:7062788-7063402 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 293

Conread position: 69-642
Cow position: chr24:9090805-9090198 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 289

Conread position: 70-423
Cow position: chr24:9187495-9187120 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 289

Conread position: 70-643
Cow position: chr24:23504615-23503997 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 291

Conread position: 72-637
Cow position: chr24:13179766-13179165 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 45

Conread position: 73-216
Cow position: chr24:6085313-6085460 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 73-487
Cow position: chr24:11151987-11151548 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 289

Conread position: 73-504
Cow position: chr24:6435733-6436189 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 289

Conread position: 73-578
Cow position: chr24:5991975-5991439 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 198

Conread position: 73-599
Cow position: chr24:17321964-17322483 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 20

Conread position: 73-601
Cow position: chr24:6353395-6353944 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 37

Conread position: 73-601
Cow position: chr24:16097777-16098315 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 264

Conread position: 73-601
Cow position: chr24:17300651-17300103 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 178

Conread position: 73-601
Cow position: chr24:38585869-38585326 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 286

Conread position: 73-632
Cow position: chr24:12238542-12239141 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 61

Conread position: 73-642
Cow position: chr24:13233508-13234110 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 289

Conread position: 73-643
Cow position: chr24:6337639-6338244 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 233

Conread position: 73-643
Cow position: chr24:16561074-16560448 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 296

Conread position: 73-643
Cow position: chr24:22972343-22972927 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 97

Conread position: 74-338
Cow position: chr24:36709832-36710103 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 39, 168

Conread position: 74-637
Cow position: chr24:35869309-35868733 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 273

Conread position: 74-642
Cow position: chr24:13189438-13190026 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 278

Conread position: 75-296
Cow position: chr24:6060449-6060685 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 75-601
Cow position: chr24:13301555-13301013 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 375
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 97, 216

Conread position: 90-600
Cow position: chr24:32847297-32847832 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 358
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 79, 17

Conread position: 92-423
Cow position: chr24:25437564-25437900 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 134

Conread position: 93-603
Cow position: chr24:12205060-12204533 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 6

Conread position: 99-343
Cow position: chr24:10222893-10222634 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 32

Conread position: 144-644
Cow position: chr24:12127788-12127248 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 223

Conread position: 146-600
Cow position: chr24:6344270-6344726 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 301
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 23, 65

Conread position: 149-564
Cow position: chr24:8606147-8606593 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 205

Conread position: 157-573
Cow position: chr24:310214-310649 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 29

Conread position: 158-601
Cow position: chr24:6324002-6323541 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 170

Conread position: 167-599
Cow position: chr24:40656696-40657111 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 289
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 313, 77

Conread position: 167-601
Cow position: chr24:13044271-13043818 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 182

Conread position: 167-632
Cow position: chr24:6023730-6023237 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 178

Conread position: 170-585
Cow position: chr24:4044891-4044461 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 285
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 47, 140

Conread position: 170-602
Cow position: chr24:29352484-29352047 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 286
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 41

Conread position: 171-588
Cow position: chr24:42584390-42583974 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 112, 7

Conread position: 171-601
Cow position: chr24:22321092-22321544 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 285
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 55, 110

Conread position: 175-595
Cow position: chr24:12569397-12569821 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 80

Conread position: 179-643
Cow position: chr24:12334359-12333876 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 9

Conread position: 182-336
Cow position: chr24:17733857-17734011 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 30

Conread position: 182-601
Cow position: chr24:25467261-25466851 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 275
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 73, 66

Conread position: 189-415
Cow position: chr24:40468431-40468661 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 31, 157

Conread position: 194-487
Cow position: chr24:16083397-16083092 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 152

Conread position: 198-538
Cow position: chr24:17278993-17278656 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 230
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 144

Conread position: 216-580
Cow position: chr24:39492226-39491847 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 239
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 326

Conread position: 216-601
Cow position: chr24:6668327-6667949 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 268
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 289, 78

Conread position: 216-601
Cow position: chr24:14755409-14755808 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 128

Conread position: 220-601
Cow position: chr24:12108151-12107756 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 206
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 32, 19

Conread position: 224-589
Cow position: chr24:36723249-36723630 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 165, 27

Conread position: 224-601
Cow position: chr24:12149876-12149480 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 108

Conread position: 256-600
Cow position: chr24:6036442-6036797 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 82

Conread position: 259-601
Cow position: chr24:5776943-5776592 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 130, 68

Conread position: 271-603
Cow position: chr24:41003953-41004297 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 72

Conread position: 280-642
Cow position: chr24:6963274-6962888 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 62

Conread position: 281-643
Cow position: chr24:36558073-36557708 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 61

Conread position: 313-601
Cow position: chr24:13322344-13322632 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 27

Conread position: 332-637
Cow position: chr24:19469072-19468752 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 28

Conread position: 334-643
Cow position: chr24:20286383-20286050 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 63, 26

Conread position: 361-600
Cow position: chr24:6060973-6061217 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 144, 0

Conread position: 398-603
Cow position: chr24:25184806-25185016 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 104, 64

Conread position: 410-643
Cow position: chr24:40468781-40469035 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 40, 0

Conread position: 419-601
Cow position: chr24:12163852-12164041 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 86, 166

Conread position: 422-601
Cow position: chr24:23094401-23094214 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 83, 0

Conread position: 428-601
Cow position: chr24:25438231-25438411 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 78, 0

Conread position: 440-601
Cow position: chr24:24074635-24074470 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 46

Conread position: 474-642
Cow position: chr24:16082825-16082638 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 32, 0

Show alignments to all cow chromosomes.