Cow genome map
| Conread name: | Ss1.1-rspc033_l13.5 |
| Conread position: | 16-579 |
| Cow position: | chr25:18305295-18305888 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 16-601 |
| Cow position: | chr25:18273622-18273016 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 16-642 |
| Cow position: | chr25:11041513-11042165 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 208 |
| Conread position: | 17-356 |
| Cow position: | chr25:24659065-24658697 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 17-569 |
| Cow position: | chr25:22148687-22149281 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 355 |
| Conread position: | 17-643 |
| Cow position: | chr25:13782182-13782872 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 363 |
| Conread position: | 17-643 |
| Cow position: | chr25:34345856-34345180 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 358 |
| Conread position: | 18-593 |
| Cow position: | chr25:24216312-24215733 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 18-601 |
| Cow position: | chr25:11931630-11931012 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 18-608 |
| Cow position: | chr25:18177847-18178472 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 204 |
| Conread position: | 26-608 |
| Cow position: | chr25:26928457-26929055 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 158 |
| Conread position: | 67-504 |
| Cow position: | chr25:21902244-21902703 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 155 |
| Conread position: | 69-486 |
| Cow position: | chr25:20774162-20773721 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 24 |
| Conread position: | 69-642 |
| Cow position: | chr25:13693460-13692843 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 293 |
| Conread position: | 69-642 |
| Cow position: | chr25:15365161-15365735 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 206 |
| Conread position: | 69-643 |
| Cow position: | chr25:13062501-13061886 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 292 |
| Conread position: | 72-335 |
| Cow position: | chr25:33259914-33260164 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 89, 5 |
| Conread position: | 72-482 |
| Cow position: | chr25:26732203-26732623 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 97, 20 |
| Conread position: | 73-481 |
| Cow position: | chr25:18192549-18192115 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 290 |
| Conread position: | 73-504 |
| Cow position: | chr25:30266706-30267158 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 283 |
| Conread position: | 73-577 |
| Cow position: | chr25:17559348-17558817 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 274 |
| Conread position: | 73-601 |
| Cow position: | chr25:17588344-17587796 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 213 |
| Conread position: | 73-628 |
| Cow position: | chr25:17655653-17656211 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 174 |
| Conread position: | 73-639 |
| Cow position: | chr25:19921744-19922361 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 301 |
| Conread position: | 73-642 |
| Cow position: | chr25:14957237-14956664 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 174 |
| Conread position: | 73-642 |
| Cow position: | chr25:27021373-27020773 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 73 |
| Conread position: | 73-643 |
| Cow position: | chr25:12941459-12940848 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 289 |
| Conread position: | 73-643 |
| Cow position: | chr25:18888529-18887919 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 287 |
| Conread position: | 74-575 |
| Cow position: | chr25:18251699-18251191 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 339 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 74-598 |
| Cow position: | chr25:18486336-18485798 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 75-631 |
| Cow position: | chr25:25507917-25508517 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 307 |
| Conread position: | 76-643 |
| Cow position: | chr25:20630844-20631449 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 281 |
| Conread position: | 78-643 |
| Cow position: | chr25:27523379-27522805 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 268 |
| Conread position: | 117-614 |
| Cow position: | chr25:12757874-12757333 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 259 |
| Conread position: | 142-588 |
| Cow position: | chr25:11830822-11830353 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 308 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 22, 228 |
| Conread position: | 143-601 |
| Cow position: | chr25:23847908-23847465 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 302 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 276, 27 |
| Conread position: | 149-523 |
| Cow position: | chr25:13794126-13793747 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 13, 164 |
| Conread position: | 162-503 |
| Cow position: | chr25:9392948-9393301 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 162-635 |
| Cow position: | chr25:19339283-19338783 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 159 |
| Conread position: | 164-645 |
| Cow position: | chr25:35847599-35848075 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 168-602 |
| Cow position: | chr25:30149391-30148955 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 176-535 |
| Cow position: | chr25:25543248-25543607 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 181-586 |
| Cow position: | chr25:21545295-21545709 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 182-597 |
| Cow position: | chr25:10944240-10943819 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 211, 48 |
| Conread position: | 188-642 |
| Cow position: | chr25:20346641-20346158 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 159 |
| Conread position: | 211-638 |
| Cow position: | chr25:32580892-32581342 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 131 |
| Conread position: | 215-473 |
| Cow position: | chr25:33614219-33614479 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 126 |
| Conread position: | 216-601 |
| Cow position: | chr25:18450716-18451107 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 278 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 217-514 |
| Cow position: | chr25:4533126-4532831 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 221-642 |
| Cow position: | chr25:18210771-18210343 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 233-601 |
| Cow position: | chr25:16925015-16924631 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 235-602 |
| Cow position: | chr25:13772136-13771773 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 192, 20 |
| Conread position: | 255-478 |
| Cow position: | chr25:30757065-30756844 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 16, 85 |
| Conread position: | 286-601 |
| Cow position: | chr25:35588882-35588564 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 134, 57 |
| Conread position: | 288-608 |
| Cow position: | chr25:33575498-33575161 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 313-600 |
| Cow position: | chr25:20097895-20098185 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 114, 43 |
| Conread position: | 331-601 |
| Cow position: | chr25:34238731-34238456 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 341-635 |
| Cow position: | chr25:2368503-2368806 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 82, 19 |
| Conread position: | 396-644 |
| Cow position: | chr25:35627887-35627623 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 111, 14 |
| Conread position: | 410-632 |
| Cow position: | chr25:29358056-29358294 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 55 |
| Conread position: | 444-643 |
| Cow position: | chr25:28861214-28861433 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 471-642 |
| Cow position: | chr25:18192017-18191831 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 35, 146 |
| Conread position: | 503-641 |
| Cow position: | chr25:33664449-33664313 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.