Cow genome map
| Conread name: | Ss1.1-rspc033_l13.5 |
| Conread position: | 7-643 |
| Cow position: | chr26:21825524-21824848 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 253 |
| Conread position: | 16-233 |
| Cow position: | chr26:9843738-9843501 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 16-622 |
| Cow position: | chr26:30588199-30587568 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 174 |
| Conread position: | 16-643 |
| Cow position: | chr26:19350356-19349685 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 263 |
| Conread position: | 18-601 |
| Cow position: | chr26:6848276-6847676 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 18-643 |
| Cow position: | chr26:5676274-5676967 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 385 |
| Conread position: | 18-644 |
| Cow position: | chr26:17325235-17325899 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 306 |
| Conread position: | 60-417 |
| Cow position: | chr26:15891625-15891271 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 61, 134 |
| Conread position: | 67-643 |
| Cow position: | chr26:4603930-4603329 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 162 |
| Conread position: | 68-601 |
| Cow position: | chr26:8646071-8646594 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 346 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 68-601 |
| Cow position: | chr26:35336958-35336408 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 379 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 69-233 |
| Cow position: | chr26:5218960-5218789 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 69-445 |
| Cow position: | chr26:8920059-8920475 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 74, 326 |
| Conread position: | 69-497 |
| Cow position: | chr26:12666718-12667154 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 310 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 77, 44 |
| Conread position: | 69-601 |
| Cow position: | chr26:6805838-6805285 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 271 |
| Conread position: | 69-601 |
| Cow position: | chr26:18853447-18853995 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 285 |
| Conread position: | 69-632 |
| Cow position: | chr26:2199859-2200453 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 93 |
| Conread position: | 69-642 |
| Cow position: | chr26:12587334-12586718 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 69-643 |
| Cow position: | chr26:3029620-3029003 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 293 |
| Conread position: | 71-643 |
| Cow position: | chr26:4328217-4327611 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 73-601 |
| Cow position: | chr26:17395681-17395133 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 184 |
| Conread position: | 73-603 |
| Cow position: | chr26:30783989-30784530 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 179 |
| Conread position: | 73-642 |
| Cow position: | chr26:34012903-34013493 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 236 |
| Conread position: | 73-643 |
| Cow position: | chr26:8871058-8871669 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 198 |
| Conread position: | 73-643 |
| Cow position: | chr26:14895172-14895778 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 283 |
| Conread position: | 74-423 |
| Cow position: | chr26:9561560-9561188 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 261 |
| Conread position: | 77-601 |
| Cow position: | chr26:8282577-8282033 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 369 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 68, 56 |
| Conread position: | 157-443 |
| Cow position: | chr26:1086911-1086614 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 190 |
| Conread position: | 157-570 |
| Cow position: | chr26:35369256-35369688 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 192 |
| Conread position: | 157-596 |
| Cow position: | chr26:28373909-28373450 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 192 |
| Conread position: | 161-338 |
| Cow position: | chr26:13195110-13194936 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 161-601 |
| Cow position: | chr26:11036742-11037185 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 64, 155 |
| Conread position: | 164-601 |
| Cow position: | chr26:16478657-16479104 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 165-603 |
| Cow position: | chr26:20265252-20265685 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 167-601 |
| Cow position: | chr26:26271046-26271480 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 297 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 183-586 |
| Cow position: | chr26:8192997-8192574 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 182 |
| Conread position: | 186-601 |
| Cow position: | chr26:16856747-16856324 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 163 |
| Conread position: | 194-497 |
| Cow position: | chr26:35252726-35252420 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 197-503 |
| Cow position: | chr26:12827307-12827619 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 136 |
| Conread position: | 216-421 |
| Cow position: | chr26:9843313-9843102 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 147 |
| Conread position: | 216-601 |
| Cow position: | chr26:2350820-2350417 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 216-642 |
| Cow position: | chr26:33148491-33148039 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 128 |
| Conread position: | 223-528 |
| Cow position: | chr26:8911412-8911104 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 10, 127 |
| Conread position: | 255-599 |
| Cow position: | chr26:21708975-21708623 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 104 |
| Conread position: | 256-515 |
| Cow position: | chr26:14506903-14506631 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 256-643 |
| Cow position: | chr26:9113307-9113714 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 86 |
| Conread position: | 259-504 |
| Cow position: | chr26:34029406-34029644 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 130, 36 |
| Conread position: | 303-626 |
| Cow position: | chr26:8086572-8086907 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 318-601 |
| Cow position: | chr26:21007624-21007926 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 389-547 |
| Cow position: | chr26:16725698-16725867 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 412-601 |
| Cow position: | chr26:9842824-9842628 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 459-643 |
| Cow position: | chr26:9560953-9560751 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 113 |
| Conread position: | 465-643 |
| Cow position: | chr26:27989628-27989439 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 466-601 |
| Cow position: | chr26:23888031-23888175 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 481-643 |
| Cow position: | chr26:13773236-13773057 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 25, 11 |
Show alignments to all cow chromosomes.