Cow genome map
| Conread name: | Ss1.1-rspc033_l13.5 |
| Conread position: | 16-601 |
| Cow position: | chr27:2377619-2378250 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 401 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 17-601 |
| Cow position: | chr27:4980475-4981097 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 368 |
| Conread position: | 17-601 |
| Cow position: | chr27:25803590-25802969 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 304 |
| Conread position: | 17-614 |
| Cow position: | chr27:1210458-1211094 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 359 |
| Conread position: | 17-634 |
| Cow position: | chr27:27664103-27664754 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 113 |
| Conread position: | 17-643 |
| Cow position: | chr27:9330837-9331519 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 348 |
| Conread position: | 17-643 |
| Cow position: | chr27:9992097-9991438 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 243 |
| Conread position: | 17-643 |
| Cow position: | chr27:15636244-15635565 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 356 |
| Conread position: | 17-643 |
| Cow position: | chr27:26326176-26326839 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 18-643 |
| Cow position: | chr27:15274960-15274292 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 344 |
| Conread position: | 19-601 |
| Cow position: | chr27:28079538-28080133 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 45 |
| Conread position: | 24-625 |
| Cow position: | chr27:8735294-8735919 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 193 |
| Conread position: | 41-373 |
| Cow position: | chr27:16425867-16426206 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 14, 5 |
| Conread position: | 41-501 |
| Cow position: | chr27:30911371-30911847 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 55-601 |
| Cow position: | chr27:25084729-25085285 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 67-586 |
| Cow position: | chr27:16611804-16611262 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 348 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 79, 54 |
| Conread position: | 67-601 |
| Cow position: | chr27:1848181-1847659 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 348 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 67-643 |
| Cow position: | chr27:12748201-12748815 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 69-218 |
| Cow position: | chr27:14459283-14459117 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 69-477 |
| Cow position: | chr27:23292440-23292848 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 19 |
| Conread position: | 69-502 |
| Cow position: | chr27:19259860-19260317 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 203 |
| Conread position: | 69-643 |
| Cow position: | chr27:26554235-26553667 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 72-337 |
| Cow position: | chr27:23904828-23904549 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 72-379 |
| Cow position: | chr27:7792673-7792363 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 75, 91 |
| Conread position: | 73-453 |
| Cow position: | chr27:16552035-16552455 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 73, 83 |
| Conread position: | 73-636 |
| Cow position: | chr27:5912084-5912686 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 179 |
| Conread position: | 73-642 |
| Cow position: | chr27:16033238-16032625 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 285 |
| Conread position: | 73-643 |
| Cow position: | chr27:3234368-3233745 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 317 |
| Conread position: | 73-643 |
| Cow position: | chr27:13898489-13899089 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 113 |
| Conread position: | 74-642 |
| Cow position: | chr27:1677414-1676795 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 77-384 |
| Cow position: | chr27:11486482-11486790 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 64 |
| Conread position: | 77-601 |
| Cow position: | chr27:25058086-25058626 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 362 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 69, 228 |
| Conread position: | 78-531 |
| Cow position: | chr27:21335110-21335585 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 310 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 88-601 |
| Cow position: | chr27:167727-167203 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 62 |
| Conread position: | 125-601 |
| Cow position: | chr27:29855944-29856425 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 333 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 118, 15 |
| Conread position: | 142-514 |
| Cow position: | chr27:3104987-3105369 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 161-644 |
| Cow position: | chr27:798301-797789 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 188 |
| Conread position: | 163-472 |
| Cow position: | chr27:1575868-1576187 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 169-602 |
| Cow position: | chr27:17818101-17818544 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 188-603 |
| Cow position: | chr27:23319660-23319235 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 189-643 |
| Cow position: | chr27:19524848-19525324 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 157 |
| Conread position: | 218-422 |
| Cow position: | chr27:15036028-15035823 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 220-608 |
| Cow position: | chr27:26032537-26032141 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 23, 115 |
| Conread position: | 223-566 |
| Cow position: | chr27:21286210-21285860 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 77, 21 |
| Conread position: | 223-601 |
| Cow position: | chr27:28892952-28893333 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 238-643 |
| Cow position: | chr27:8199158-8199586 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 101 |
| Conread position: | 256-600 |
| Cow position: | chr27:29056528-29056884 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 86 |
| Conread position: | 258-554 |
| Cow position: | chr27:1900668-1900360 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 262-587 |
| Cow position: | chr27:6160495-6160158 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 263-594 |
| Cow position: | chr27:6023956-6024293 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 228, 10 |
| Conread position: | 267-643 |
| Cow position: | chr27:27194979-27194579 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 339-638 |
| Cow position: | chr27:16264595-16264297 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 342-643 |
| Cow position: | chr27:10327275-10326951 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 355-621 |
| Cow position: | chr27:16426262-16426515 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 408-643 |
| Cow position: | chr27:15035589-15035331 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 502-640 |
| Cow position: | chr27:23409548-23409680 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
Show alignments to all cow chromosomes.