Cow genome map

Conread name: Ss1.1-rspc033_l13.5

Conread position: 5-504
Cow position:
Alignm length: 532
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 366

Conread position: 7-601
Cow position:
Alignm length: 619
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 103

Conread position: 12-643
Cow position:
Alignm length: 696
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 282

Conread position: 12-643
Cow position:
Alignm length: 674
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 373

Conread position: 16-250
Cow position:
Alignm length: 258
Alignm identity: 191
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 16-601
Cow position:
Alignm length: 626
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 246

Conread position: 16-601
Cow position:
Alignm length: 613
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 60

Conread position: 16-603
Cow position:
Alignm length: 624
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 8

Conread position: 16-603
Cow position:
Alignm length: 611
Alignm identity: 394
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 45, 21

Conread position: 16-603
Cow position:
Alignm length: 624
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 112

Conread position: 16-637
Cow position:
Alignm length: 671
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 86

Conread position: 16-643
Cow position:
Alignm length: 670
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 347

Conread position: 16-644
Cow position:
Alignm length: 675
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 15

Conread position: 17-315
Cow position:
Alignm length: 316
Alignm identity: 214
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 102, 35

Conread position: 17-478
Cow position:
Alignm length: 490
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 236

Conread position: 17-601
Cow position:
Alignm length: 610
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 139

Conread position: 17-643
Cow position:
Alignm length: 683
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 297

Conread position: 17-643
Cow position:
Alignm length: 671
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 107

Conread position: 17-643
Cow position:
Alignm length: 684
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 353

Conread position: 17-643
Cow position:
Alignm length: 678
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 348

Conread position: 17-643
Cow position:
Alignm length: 683
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 357

Conread position: 17-643
Cow position:
Alignm length: 691
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 37

Conread position: 17-643
Cow position:
Alignm length: 680
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 348

Conread position: 17-643
Cow position:
Alignm length: 678
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 348

Conread position: 17-643
Cow position:
Alignm length: 678
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 346

Conread position: 17-643
Cow position:
Alignm length: 674
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 239

Conread position: 17-643
Cow position:
Alignm length: 675
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 355

Conread position: 18-321
Cow position:
Alignm length: 328
Alignm identity: 231
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 48, 255

Conread position: 19-336
Cow position:
Alignm length: 332
Alignm identity: 227
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 218

Conread position: 19-643
Cow position:
Alignm length: 678
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 348

Conread position: 19-643
Cow position:
Alignm length: 683
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 309

Conread position: 20-642
Cow position:
Alignm length: 670
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 14

Conread position: 22-484
Cow position:
Alignm length: 489
Alignm identity: 306
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 128, 16

Conread position: 67-423
Cow position:
Alignm length: 378
Alignm identity: 247
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 69, 213

Conread position: 67-580
Cow position:
Alignm length: 537
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 52

Conread position: 67-603
Cow position:
Alignm length: 576
Alignm identity: 371
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 70, 303

Conread position: 68-599
Cow position:
Alignm length: 544
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 66

Conread position: 68-638
Cow position:
Alignm length: 600
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 176

Conread position: 69-547
Cow position:
Alignm length: 496
Alignm identity: 331
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 61, 43

Conread position: 69-601
Cow position:
Alignm length: 569
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 292

Conread position: 69-601
Cow position:
Alignm length: 542
Alignm identity: 339
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 59, 27

Conread position: 69-642
Cow position:
Alignm length: 618
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 288

Conread position: 69-643
Cow position:
Alignm length: 609
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 246

Conread position: 73-564
Cow position:
Alignm length: 511
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 98

Conread position: 73-575
Cow position:
Alignm length: 525
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 18

Conread position: 73-601
Cow position:
Alignm length: 559
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 20

Conread position: 73-601
Cow position:
Alignm length: 562
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 145

Conread position: 73-602
Cow position:
Alignm length: 547
Alignm identity: 361
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 50, 39

Conread position: 73-643
Cow position:
Alignm length: 620
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 44

Conread position: 73-643
Cow position:
Alignm length: 610
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 163

Conread position: 73-643
Cow position:
Alignm length: 602
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 164

Conread position: 74-600
Cow position:
Alignm length: 555
Alignm identity: 354
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 92, 67

Conread position: 74-601
Cow position:
Alignm length: 560
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 59

Conread position: 75-604
Cow position:
Alignm length: 563
Alignm identity: 356
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 49, 236

Conread position: 75-644
Cow position:
Alignm length: 615
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 287

Conread position: 77-504
Cow position:
Alignm length: 453
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 283

Conread position: 77-642
Cow position:
Alignm length: 612
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 203

Conread position: 77-642
Cow position:
Alignm length: 607
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 281

Conread position: 78-642
Cow position:
Alignm length: 605
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 39

Conread position: 81-515
Cow position:
Alignm length: 446
Alignm identity: 279
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 59, 124

Conread position: 85-514
Cow position:
Alignm length: 446
Alignm identity: 287
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 34, 27

Conread position: 87-601
Cow position:
Alignm length: 557
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 99

Conread position: 88-598
Cow position:
Alignm length: 546
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 11

Conread position: 91-577
Cow position:
Alignm length: 535
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 255

Conread position: 97-644
Cow position:
Alignm length: 600
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 248

Conread position: 101-637
Cow position:
Alignm length: 562
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 45

Conread position: 125-601
Cow position:
Alignm length: 497
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 23

Conread position: 138-601
Cow position:
Alignm length: 494
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 220

Conread position: 142-503
Cow position:
Alignm length: 368
Alignm identity: 237
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 20

Conread position: 142-601
Cow position:
Alignm length: 471
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 207

Conread position: 157-633
Cow position:
Alignm length: 509
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 189

Conread position: 157-642
Cow position:
Alignm length: 519
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 192

Conread position: 161-375
Cow position:
Alignm length: 217
Alignm identity: 155
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 81, 50

Conread position: 167-436
Cow position:
Alignm length: 283
Alignm identity: 200
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 54, 178

Conread position: 171-470
Cow position:
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 175

Conread position: 179-643
Cow position:
Alignm length: 497
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 15

Conread position: 181-643
Cow position:
Alignm length: 492
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 13

Conread position: 185-637
Cow position:
Alignm length: 488
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 182

Conread position: 197-601
Cow position:
Alignm length: 422
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 34

Conread position: 216-421
Cow position:
Alignm length: 209
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 126

Conread position: 216-601
Cow position:
Alignm length: 399
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 85

Conread position: 223-634
Cow position:
Alignm length: 428
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 116

Conread position: 241-575
Cow position:
Alignm length: 341
Alignm identity: 216
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 170, 98

Conread position: 242-601
Cow position:
Alignm length: 369
Alignm identity: 236
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 6, 14

Conread position: 259-417
Cow position:
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 129, 100

Conread position: 274-562
Cow position:
Alignm length: 290
Alignm identity: 187
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 146, 51

Conread position: 280-603
Cow position:
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 27

Conread position: 286-601
Cow position:
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 52

Conread position: 294-578
Cow position:
Alignm length: 294
Alignm identity: 197
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 61, 48

Conread position: 296-642
Cow position:
Alignm length: 370
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 46

Conread position: 320-643
Cow position:
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 21

Conread position: 328-642
Cow position:
Alignm length: 337
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 14

Conread position: 341-600
Cow position:
Alignm length: 266
Alignm identity: 181
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 49, 19

Conread position: 342-601
Cow position:
Alignm length: 272
Alignm identity: 191
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 45, 18

Conread position: 361-599
Cow position:
Alignm length: 250
Alignm identity: 174
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 382-642
Cow position:
Alignm length: 283
Alignm identity: 208
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 382-644
Cow position:
Alignm length: 272
Alignm identity: 183
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 203

Conread position: 395-588
Cow position:
Alignm length: 202
Alignm identity: 139
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 62

Conread position: 407-626
Cow position:
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 0

Conread position: 420-643
Cow position:
Alignm length: 244
Alignm identity: 178
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 60, 215

Conread position: 428-635
Cow position:
Alignm length: 223
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 77, 153

Conread position: 443-608
Cow position:
Alignm length: 166
Alignm identity: 119
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 464-642
Cow position:
Alignm length: 198
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.