Cow genome map

Conread name: Ss1.1-rspc033_l13.5

Conread position: 1-504
Cow position:
Alignm length: 533
Alignm identity: 362
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 8, 185

Conread position: 12-423
Cow position:
Alignm length: 440
Alignm identity: 297
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 47, 248

Conread position: 13-599
Cow position:
Alignm length: 631
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 90

Conread position: 15-643
Cow position:
Alignm length: 679
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 349

Conread position: 16-460
Cow position:
Alignm length: 454
Alignm identity: 292
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 32

Conread position: 16-573
Cow position:
Alignm length: 601
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 355

Conread position: 16-597
Cow position:
Alignm length: 601
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 94

Conread position: 16-601
Cow position:
Alignm length: 630
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 220

Conread position: 16-601
Cow position:
Alignm length: 621
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 250

Conread position: 16-643
Cow position:
Alignm length: 682
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 346

Conread position: 17-251
Cow position:
Alignm length: 254
Alignm identity: 181
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 45, 76

Conread position: 17-268
Cow position:
Alignm length: 265
Alignm identity: 180
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 175

Conread position: 17-515
Cow position:
Alignm length: 521
Alignm identity: 326
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 35, 53

Conread position: 17-601
Cow position:
Alignm length: 622
Alignm identity: 407
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 51, 16

Conread position: 17-635
Cow position:
Alignm length: 661
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 212

Conread position: 17-643
Cow position:
Alignm length: 670
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 324

Conread position: 17-643
Cow position:
Alignm length: 676
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 280

Conread position: 17-643
Cow position:
Alignm length: 663
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 347

Conread position: 17-643
Cow position:
Alignm length: 673
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 17

Conread position: 17-643
Cow position:
Alignm length: 691
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 86

Conread position: 17-643
Cow position:
Alignm length: 677
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 246

Conread position: 17-643
Cow position:
Alignm length: 681
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 96

Conread position: 17-643
Cow position:
Alignm length: 677
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 305

Conread position: 17-643
Cow position:
Alignm length: 675
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 351

Conread position: 17-643
Cow position:
Alignm length: 681
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 99

Conread position: 18-563
Cow position:
Alignm length: 567
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 6

Conread position: 18-643
Cow position:
Alignm length: 655
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 121

Conread position: 24-290
Cow position:
Alignm length: 275
Alignm identity: 202
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 37, 74

Conread position: 24-325
Cow position:
Alignm length: 324
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 293

Conread position: 24-534
Cow position:
Alignm length: 539
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 221

Conread position: 27-482
Cow position:
Alignm length: 477
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 46

Conread position: 65-601
Cow position:
Alignm length: 568
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 188

Conread position: 69-354
Cow position:
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 73, 235

Conread position: 69-498
Cow position:
Alignm length: 458
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 283

Conread position: 69-621
Cow position:
Alignm length: 576
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 152

Conread position: 69-642
Cow position:
Alignm length: 603
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 81

Conread position: 69-644
Cow position:
Alignm length: 620
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 218

Conread position: 70-514
Cow position:
Alignm length: 475
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 265

Conread position: 72-334
Cow position:
Alignm length: 281
Alignm identity: 198
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 65, 0

Conread position: 72-642
Cow position:
Alignm length: 612
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 286

Conread position: 73-387
Cow position:
Alignm length: 341
Alignm identity: 240
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 247

Conread position: 73-601
Cow position:
Alignm length: 559
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 289

Conread position: 73-601
Cow position:
Alignm length: 559
Alignm identity: 357
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 73, 269

Conread position: 73-601
Cow position:
Alignm length: 550
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 44

Conread position: 73-601
Cow position:
Alignm length: 562
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 288

Conread position: 73-601
Cow position:
Alignm length: 565
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 288

Conread position: 73-601
Cow position:
Alignm length: 563
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 285

Conread position: 73-601
Cow position:
Alignm length: 563
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 201

Conread position: 73-626
Cow position:
Alignm length: 580
Alignm identity: 367
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 152, 44

Conread position: 73-632
Cow position:
Alignm length: 599
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 147

Conread position: 73-642
Cow position:
Alignm length: 607
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 276

Conread position: 73-642
Cow position:
Alignm length: 622
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 73-642
Cow position:
Alignm length: 615
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 307

Conread position: 73-642
Cow position:
Alignm length: 617
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 287

Conread position: 73-642
Cow position:
Alignm length: 608
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 239

Conread position: 73-642
Cow position:
Alignm length: 614
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 46

Conread position: 73-642
Cow position:
Alignm length: 617
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 307

Conread position: 73-643
Cow position:
Alignm length: 621
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 275

Conread position: 73-643
Cow position:
Alignm length: 605
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 20

Conread position: 73-643
Cow position:
Alignm length: 604
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 241

Conread position: 73-643
Cow position:
Alignm length: 615
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 288

Conread position: 73-643
Cow position:
Alignm length: 613
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 153

Conread position: 73-644
Cow position:
Alignm length: 613
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 299

Conread position: 74-423
Cow position:
Alignm length: 363
Alignm identity: 250
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 40, 45

Conread position: 74-584
Cow position:
Alignm length: 533
Alignm identity: 355
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 96, 21

Conread position: 74-601
Cow position:
Alignm length: 560
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 83

Conread position: 74-601
Cow position:
Alignm length: 544
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 55

Conread position: 77-642
Cow position:
Alignm length: 608
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 282

Conread position: 77-643
Cow position:
Alignm length: 610
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 279

Conread position: 78-602
Cow position:
Alignm length: 534
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 68

Conread position: 80-478
Cow position:
Alignm length: 415
Alignm identity: 286
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 34, 18

Conread position: 92-601
Cow position:
Alignm length: 540
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 26

Conread position: 96-601
Cow position:
Alignm length: 539
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 250

Conread position: 112-503
Cow position:
Alignm length: 416
Alignm identity: 272
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 34, 224

Conread position: 118-370
Cow position:
Alignm length: 269
Alignm identity: 196
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 31, 16

Conread position: 120-573
Cow position:
Alignm length: 484
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 145

Conread position: 142-601
Cow position:
Alignm length: 485
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 191

Conread position: 154-415
Cow position:
Alignm length: 270
Alignm identity: 189
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 61, 155

Conread position: 157-601
Cow position:
Alignm length: 459
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 192

Conread position: 158-481
Cow position:
Alignm length: 338
Alignm identity: 228
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 16

Conread position: 161-626
Cow position:
Alignm length: 486
Alignm identity: 317
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 33

Conread position: 161-642
Cow position:
Alignm length: 508
Alignm identity: 337
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 65, 87

Conread position: 162-425
Cow position:
Alignm length: 275
Alignm identity: 181
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 58, 156

Conread position: 163-600
Cow position:
Alignm length: 461
Alignm identity: 307
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 54, 125

Conread position: 163-643
Cow position:
Alignm length: 514
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 8

Conread position: 164-603
Cow position:
Alignm length: 466
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 128

Conread position: 165-587
Cow position:
Alignm length: 430
Alignm identity: 270
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 78, 58

Conread position: 165-642
Cow position:
Alignm length: 496
Alignm identity: 325
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 41, 29

Conread position: 167-601
Cow position:
Alignm length: 455
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 140

Conread position: 170-594
Cow position:
Alignm length: 431
Alignm identity: 288
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 73, 7

Conread position: 171-601
Cow position:
Alignm length: 461
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 177

Conread position: 171-601
Cow position:
Alignm length: 447
Alignm identity: 303
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 46, 23

Conread position: 174-601
Cow position:
Alignm length: 452
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 102

Conread position: 178-642
Cow position:
Alignm length: 504
Alignm identity: 340
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 32, 43

Conread position: 181-612
Cow position:
Alignm length: 448
Alignm identity: 299
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 36, 28

Conread position: 182-434
Cow position:
Alignm length: 263
Alignm identity: 186
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 35, 9

Conread position: 182-626
Cow position:
Alignm length: 459
Alignm identity: 302
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 207, 30

Conread position: 182-642
Cow position:
Alignm length: 494
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 167

Conread position: 191-603
Cow position:
Alignm length: 443
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 158

Conread position: 191-642
Cow position:
Alignm length: 486
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 158

Conread position: 194-601
Cow position:
Alignm length: 426
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 162

Conread position: 200-631
Cow position:
Alignm length: 460
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 21

Conread position: 216-466
Cow position:
Alignm length: 260
Alignm identity: 179
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 27, 123

Conread position: 216-482
Cow position:
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 125

Conread position: 216-580
Cow position:
Alignm length: 380
Alignm identity: 243
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 123

Conread position: 216-601
Cow position:
Alignm length: 424
Alignm identity: 295
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 173, 15

Conread position: 216-602
Cow position:
Alignm length: 403
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 97

Conread position: 216-642
Cow position:
Alignm length: 451
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 128

Conread position: 218-601
Cow position:
Alignm length: 401
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 94

Conread position: 238-601
Cow position:
Alignm length: 376
Alignm identity: 255
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 177, 35

Conread position: 245-643
Cow position:
Alignm length: 424
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 87

Conread position: 255-603
Cow position:
Alignm length: 353
Alignm identity: 226
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 248, 61

Conread position: 256-441
Cow position:
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 83

Conread position: 257-601
Cow position:
Alignm length: 367
Alignm identity: 252
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 136, 48

Conread position: 259-601
Cow position:
Alignm length: 354
Alignm identity: 227
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 134, 59

Conread position: 260-601
Cow position:
Alignm length: 354
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 68

Conread position: 268-637
Cow position:
Alignm length: 381
Alignm identity: 246
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 125, 81

Conread position: 275-606
Cow position:
Alignm length: 340
Alignm identity: 219
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 118, 81

Conread position: 280-643
Cow position:
Alignm length: 386
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 7

Conread position: 281-601
Cow position:
Alignm length: 343
Alignm identity: 237
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 112, 61

Conread position: 289-614
Cow position:
Alignm length: 345
Alignm identity: 230
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 97, 53

Conread position: 292-642
Cow position:
Alignm length: 378
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 31

Conread position: 293-575
Cow position:
Alignm length: 288
Alignm identity: 203
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 180, 45

Conread position: 318-600
Cow position:
Alignm length: 296
Alignm identity: 198
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 12, 48

Conread position: 328-601
Cow position:
Alignm length: 283
Alignm identity: 204
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 63, 32

Conread position: 339-642
Cow position:
Alignm length: 326
Alignm identity: 207
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 79, 0

Conread position: 347-637
Cow position:
Alignm length: 306
Alignm identity: 219
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 43, 13

Conread position: 360-642
Cow position:
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 365-601
Cow position:
Alignm length: 251
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 367-643
Cow position:
Alignm length: 299
Alignm identity: 214
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 32, 0

Conread position: 373-599
Cow position:
Alignm length: 234
Alignm identity: 177
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 30, 0

Conread position: 399-601
Cow position:
Alignm length: 214
Alignm identity: 163
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 24, 0

Conread position: 420-607
Cow position:
Alignm length: 199
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 425-642
Cow position:
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 0

Conread position: 426-601
Cow position:
Alignm length: 184
Alignm identity: 138
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 428-599
Cow position:
Alignm length: 179
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 428-638
Cow position:
Alignm length: 219
Alignm identity: 164
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 78, 162

Conread position: 433-601
Cow position:
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 460-643
Cow position:
Alignm length: 206
Alignm identity: 151
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 495-643
Cow position:
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 0

Show alignments to all cow chromosomes.