Cow genome map
| Conread name: | Ss1.1-rspc033_l13.5 |
| Conread position: | 1-644 |
| Cow position: | chr5:46668856-46669535 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 112 |
| Conread position: | 2-601 |
| Cow position: | chr5:37733270-37733908 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 7-373 |
| Cow position: | chr5:60716688-60716306 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 12-643 |
| Cow position: | chr5:7274770-7275437 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 16-291 |
| Cow position: | chr5:24107754-24107457 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 205 |
| Conread position: | 16-415 |
| Cow position: | chr5:12642815-12642387 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 370 |
| Conread position: | 16-520 |
| Cow position: | chr5:49519490-49520015 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 303 |
| Conread position: | 16-584 |
| Cow position: | chr5:34297871-34298432 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 144 |
| Conread position: | 16-601 |
| Cow position: | chr5:31100493-31099881 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 345 |
| Conread position: | 16-601 |
| Cow position: | chr5:46004926-46004322 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 117 |
| Conread position: | 16-601 |
| Cow position: | chr5:46664947-46665552 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 89 |
| Conread position: | 16-642 |
| Cow position: | chr5:50870558-50871215 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 301 |
| Conread position: | 16-644 |
| Cow position: | chr5:41527862-41527193 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 16-647 |
| Cow position: | chr5:45701245-45701929 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 17-315 |
| Cow position: | chr5:14344500-14344182 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 287 |
| Conread position: | 17-362 |
| Cow position: | chr5:20311420-20311053 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 39, 312 |
| Conread position: | 17-436 |
| Cow position: | chr5:34697535-34697980 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 296 |
| Conread position: | 17-558 |
| Cow position: | chr5:1341102-1340534 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 345 |
| Conread position: | 17-638 |
| Cow position: | chr5:4386174-4386825 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 123 |
| Conread position: | 17-638 |
| Cow position: | chr5:57481608-57480939 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 202 |
| Conread position: | 17-643 |
| Cow position: | chr5:3503175-3502498 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 348 |
| Conread position: | 17-643 |
| Cow position: | chr5:3786858-3787545 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 380 |
| Conread position: | 17-643 |
| Cow position: | chr5:6153972-6153289 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 374 |
| Conread position: | 17-643 |
| Cow position: | chr5:46737646-46736986 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 154 |
| Conread position: | 17-643 |
| Cow position: | chr5:48807808-48807124 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 292 |
| Conread position: | 17-643 |
| Cow position: | chr5:55628922-55629591 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 353 |
| Conread position: | 17-643 |
| Cow position: | chr5:64781085-64780406 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 369 |
| Conread position: | 17-644 |
| Cow position: | chr5:59283247-59283910 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 353 |
| Conread position: | 18-242 |
| Cow position: | chr5:41956437-41956206 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 101 |
| Conread position: | 18-601 |
| Cow position: | chr5:18400759-18400149 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 310 |
| Conread position: | 18-643 |
| Cow position: | chr5:18560471-18559802 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 345 |
| Conread position: | 19-573 |
| Cow position: | chr5:15375649-15376213 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 19-602 |
| Cow position: | chr5:9038175-9037591 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 387 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 20-643 |
| Cow position: | chr5:14784424-14783776 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 24-643 |
| Cow position: | chr5:30580277-30580943 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 67-375 |
| Cow position: | chr5:26980457-26980756 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 67-548 |
| Cow position: | chr5:61081223-61080707 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 67-601 |
| Cow position: | chr5:18121493-18120927 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 295 |
| Conread position: | 67-642 |
| Cow position: | chr5:18273751-18274355 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 290 |
| Conread position: | 67-643 |
| Cow position: | chr5:10855827-10855210 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 291 |
| Conread position: | 69-378 |
| Cow position: | chr5:54860929-54860613 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 69-392 |
| Cow position: | chr5:42505996-42506337 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 65, 290 |
| Conread position: | 69-566 |
| Cow position: | chr5:46808303-46808823 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 255 |
| Conread position: | 69-598 |
| Cow position: | chr5:40923648-40923123 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 148 |
| Conread position: | 69-601 |
| Cow position: | chr5:23229984-23230533 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 183 |
| Conread position: | 69-601 |
| Cow position: | chr5:35301090-35301653 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 202 |
| Conread position: | 69-601 |
| Cow position: | chr5:40789061-40789612 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 64 |
| Conread position: | 69-601 |
| Cow position: | chr5:58151789-58151250 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 74 |
| Conread position: | 69-626 |
| Cow position: | chr5:23686901-23686336 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 183 |
| Conread position: | 69-630 |
| Cow position: | chr5:69622599-69623180 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 370 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 146, 74 |
| Conread position: | 69-631 |
| Cow position: | chr5:23669137-23668545 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 69-632 |
| Cow position: | chr5:26078201-26077596 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 69-642 |
| Cow position: | chr5:988070-987460 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 71 |
| Conread position: | 69-642 |
| Cow position: | chr5:5104214-5104823 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 288 |
| Conread position: | 69-642 |
| Cow position: | chr5:10813759-10813142 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 293 |
| Conread position: | 69-642 |
| Cow position: | chr5:12731718-12731107 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 288 |
| Conread position: | 69-642 |
| Cow position: | chr5:59061628-59062244 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 299 |
| Conread position: | 69-643 |
| Cow position: | chr5:7143055-7142465 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 69-644 |
| Cow position: | chr5:4757185-4756575 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 153 |
| Conread position: | 69-644 |
| Cow position: | chr5:24099657-24100257 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 70-502 |
| Cow position: | chr5:53703207-53702782 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 298 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 149, 42 |
| Conread position: | 70-573 |
| Cow position: | chr5:18664776-18665292 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 184 |
| Conread position: | 70-642 |
| Cow position: | chr5:23959336-23958722 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 234 |
| Conread position: | 72-564 |
| Cow position: | chr5:24151774-24152286 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 248 |
| Conread position: | 73-246 |
| Cow position: | chr5:27197315-27197494 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 73-280 |
| Cow position: | chr5:46629183-46628966 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 145 |
| Conread position: | 73-344 |
| Cow position: | chr5:73488564-73488276 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 65, 252 |
| Conread position: | 73-493 |
| Cow position: | chr5:51308867-51308428 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 73-497 |
| Cow position: | chr5:27908273-27907827 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 286 |
| Conread position: | 73-503 |
| Cow position: | chr5:34287226-34286783 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 221 |
| Conread position: | 73-505 |
| Cow position: | chr5:32951897-32952346 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 238 |
| Conread position: | 73-576 |
| Cow position: | chr5:41960741-41960227 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 29 |
| Conread position: | 73-601 |
| Cow position: | chr5:2915445-2915989 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 113 |
| Conread position: | 73-601 |
| Cow position: | chr5:4018199-4017659 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 73-601 |
| Cow position: | chr5:7811257-7810695 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 73-601 |
| Cow position: | chr5:27003231-27003787 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 45 |
| Conread position: | 73-601 |
| Cow position: | chr5:29434722-29434208 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 154 |
| Conread position: | 73-601 |
| Cow position: | chr5:29767123-29767650 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 73-601 |
| Cow position: | chr5:47893549-47893013 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 286 |
| Conread position: | 73-619 |
| Cow position: | chr5:18885538-18884959 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 563 |
| Conread position: | 73-619 |
| Cow position: | chr5:31707558-31708136 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 289 |
| Conread position: | 73-626 |
| Cow position: | chr5:58197011-58197596 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 286 |
| Conread position: | 73-642 |
| Cow position: | chr5:3965442-3966053 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 210 |
| Conread position: | 73-642 |
| Cow position: | chr5:10842389-10841772 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 73-642 |
| Cow position: | chr5:46777389-46778001 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 73-642 |
| Cow position: | chr5:47830082-47829467 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 285 |
| Conread position: | 73-644 |
| Cow position: | chr5:32281769-32281200 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 116 |
| Conread position: | 74-450 |
| Cow position: | chr5:54791636-54791236 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 285 |
| Conread position: | 74-504 |
| Cow position: | chr5:53006618-53007054 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 304 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 74-601 |
| Cow position: | chr5:49757677-49757155 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 77-586 |
| Cow position: | chr5:55834774-55834273 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 77-644 |
| Cow position: | chr5:32773765-32774373 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 78-602 |
| Cow position: | chr5:21116752-21117307 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 354 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 34 |
| Conread position: | 78-632 |
| Cow position: | chr5:10775269-10774666 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 290 |
| Conread position: | 84-608 |
| Cow position: | chr5:4070226-4070778 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 264 |
| Conread position: | 88-601 |
| Cow position: | chr5:34952902-34953404 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 317 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 89-584 |
| Cow position: | chr5:52434750-52435273 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 178 |
| Conread position: | 106-335 |
| Cow position: | chr5:53624777-53624550 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 115, 71 |
| Conread position: | 109-309 |
| Cow position: | chr5:41554300-41554085 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 34, 195 |
| Conread position: | 118-411 |
| Cow position: | chr5:55653804-55653490 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 118-608 |
| Cow position: | chr5:48533029-48533518 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 341 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 27, 148 |
| Conread position: | 119-601 |
| Cow position: | chr5:11115709-11115219 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 240 |
| Conread position: | 137-337 |
| Cow position: | chr5:21145208-21145010 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 142-603 |
| Cow position: | chr5:53945912-53946385 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 126 |
| Conread position: | 143-601 |
| Cow position: | chr5:75624785-75625250 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 157-325 |
| Cow position: | chr5:40757556-40757723 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 157-643 |
| Cow position: | chr5:34190008-34190530 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 123 |
| Conread position: | 157-644 |
| Cow position: | chr5:6587492-6586980 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 139 |
| Conread position: | 161-601 |
| Cow position: | chr5:18549264-18549703 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 161-642 |
| Cow position: | chr5:13046753-13047246 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 200 |
| Conread position: | 162-543 |
| Cow position: | chr5:18114482-18114069 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 224 |
| Conread position: | 163-557 |
| Cow position: | chr5:42751576-42751981 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 104 |
| Conread position: | 163-643 |
| Cow position: | chr5:24295717-24296209 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 165-408 |
| Cow position: | chr5:49072551-49072316 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 170-379 |
| Cow position: | chr5:7677388-7677595 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 66, 109 |
| Conread position: | 170-598 |
| Cow position: | chr5:35527047-35527477 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 171-497 |
| Cow position: | chr5:30051627-30051299 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 171-642 |
| Cow position: | chr5:54620157-54620647 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 94 |
| Conread position: | 174-637 |
| Cow position: | chr5:28014146-28014609 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 176-584 |
| Cow position: | chr5:28333365-28332950 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 181-643 |
| Cow position: | chr5:10919956-10920443 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 111 |
| Conread position: | 182-602 |
| Cow position: | chr5:32167006-32166587 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 185-446 |
| Cow position: | chr5:46646075-46646345 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 40, 119 |
| Conread position: | 185-465 |
| Cow position: | chr5:16917355-16917074 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 193-603 |
| Cow position: | chr5:26183996-26184414 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 43 |
| Conread position: | 195-603 |
| Cow position: | chr5:28242174-28242571 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 194, 27 |
| Conread position: | 203-642 |
| Cow position: | chr5:49223345-49222882 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 216-642 |
| Cow position: | chr5:3822123-3822540 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 220-560 |
| Cow position: | chr5:50947794-50948147 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 91, 39 |
| Conread position: | 225-642 |
| Cow position: | chr5:4684637-4684197 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 117 |
| Conread position: | 256-601 |
| Cow position: | chr5:16102859-16102515 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 256-601 |
| Cow position: | chr5:73455455-73455789 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 256-643 |
| Cow position: | chr5:76096252-76096659 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 86 |
| Conread position: | 256-644 |
| Cow position: | chr5:27197807-27198216 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 86 |
| Conread position: | 263-607 |
| Cow position: | chr5:41956210-41955866 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 29 |
| Conread position: | 264-549 |
| Cow position: | chr5:2459188-2459485 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 76 |
| Conread position: | 264-601 |
| Cow position: | chr5:34201731-34201385 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 273-570 |
| Cow position: | chr5:49130461-49130756 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 233, 66 |
| Conread position: | 274-601 |
| Cow position: | chr5:46628165-46627844 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 277-632 |
| Cow position: | chr5:41376635-41376257 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 65 |
| Conread position: | 280-469 |
| Cow position: | chr5:23236138-23236331 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 107, 59 |
| Conread position: | 286-642 |
| Cow position: | chr5:307185-306806 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 56 |
| Conread position: | 303-642 |
| Cow position: | chr5:40131358-40130994 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 304-601 |
| Cow position: | chr5:66495560-66495862 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 310-643 |
| Cow position: | chr5:23831069-23830719 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 317-601 |
| Cow position: | chr5:40758185-40758475 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 95, 25 |
| Conread position: | 319-514 |
| Cow position: | chr5:7227121-7227310 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 324-601 |
| Cow position: | chr5:31122320-31122032 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 328-622 |
| Cow position: | chr5:51744552-51744850 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 14 |
| Conread position: | 333-601 |
| Cow position: | chr5:57816419-57816138 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 335-601 |
| Cow position: | chr5:2975066-2975345 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 349-642 |
| Cow position: | chr5:37378416-37378734 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 351-601 |
| Cow position: | chr5:14658159-14657897 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 366-601 |
| Cow position: | chr5:5666277-5666036 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 368-601 |
| Cow position: | chr5:43988412-43988653 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 388-643 |
| Cow position: | chr5:12681719-12681447 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 389-601 |
| Cow position: | chr5:20108234-20108457 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 396-643 |
| Cow position: | chr5:34697990-34698259 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 399-602 |
| Cow position: | chr5:20310853-20310641 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 178 |
| Conread position: | 419-601 |
| Cow position: | chr5:41928862-41928672 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 419-638 |
| Cow position: | chr5:57000909-57001123 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 107, 76 |
| Conread position: | 420-601 |
| Cow position: | chr5:12642068-12641878 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 427-642 |
| Cow position: | chr5:54860600-54860381 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 428-602 |
| Cow position: | chr5:46646350-46646532 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 433-601 |
| Cow position: | chr5:3424739-3424916 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 73, 7 |
| Conread position: | 441-642 |
| Cow position: | chr5:58191374-58191153 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 64, 0 |
Show alignments to all cow chromosomes.