Cow genome map
| Conread name: | Ss1.1-rspl28_h4.5 | 
| Conread position: | 431-1089 | 
| Cow position: | chr3:24315433-24316092 (view UCSC Genome Browser custom track) | 
| Alignm length: | 660 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 623, 0 | 
| Conread position: | 773-1089 | 
| Cow position: | chr3:12749707-12750019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 9, 17 | 
| Conread position: | 774-1004 | 
| Cow position: | chr3:47341472-47341247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 9e-31 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 774-1089 | 
| Cow position: | chr3:2572331-2572646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 280, 22 | 
| Conread position: | 776-1084 | 
| Cow position: | chr3:50112216-50111911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 242, 80 | 
| Conread position: | 777-1084 | 
| Cow position: | chr3:38251656-38251958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 71, 156 | 
| Conread position: | 781-1089 | 
| Cow position: | chr3:35342460-35342769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 273, 0 | 
| Conread position: | 782-1031 | 
| Cow position: | chr3:4810954-4811198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 28, 33 | 
| Conread position: | 782-1032 | 
| Cow position: | chr3:58103395-58103644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 233, 86 | 
| Conread position: | 782-1050 | 
| Cow position: | chr3:12664744-12665012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 782-1064 | 
| Cow position: | chr3:29581470-29581753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 36, 262 | 
| Conread position: | 782-1070 | 
| Cow position: | chr3:45864089-45863789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 50, 135 | 
| Conread position: | 782-1076 | 
| Cow position: | chr3:69421654-69421363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 273, 75 | 
| Conread position: | 782-1082 | 
| Cow position: | chr3:73638094-73638391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 14, 108 | 
| Conread position: | 782-1083 | 
| Cow position: | chr3:40285505-40285202 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 275, 0 | 
| Conread position: | 782-1083 | 
| Cow position: | chr3:56963621-56963317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 39, 28 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:1482846-1483148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 122, 28 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:9404423-9404117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 73, 210 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:14452469-14452777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 254 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:18759606-18759303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 71 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:18814317-18814625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 272, 0 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:29574315-29574007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 272, 0 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:32220543-32220842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:53908128-53907814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 28, 33 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:56719515-56719207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 157 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:59332272-59332578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 272, 89 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:66608376-66608677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 272, 71 | 
| Conread position: | 782-1089 | 
| Cow position: | chr3:77726286-77726579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 276, 108 | 
| Conread position: | 782-1093 | 
| Cow position: | chr3:37950010-37949703 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 125, 68 | 
| Conread position: | 782-1117 | 
| Cow position: | chr3:10931683-10932015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 272, 59 | 
| Conread position: | 783-904 | 
| Cow position: | chr3:82888813-82888930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 783-905 | 
| Cow position: | chr3:4162140-4162018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-905 | 
| Cow position: | chr3:36120696-36120818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-908 | 
| Cow position: | chr3:6441475-6441600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-923 | 
| Cow position: | chr3:12667050-12667190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-958 | 
| Cow position: | chr3:70890078-70890251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 783-959 | 
| Cow position: | chr3:59864367-59864542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 124, 0 | 
| Conread position: | 783-966 | 
| Cow position: | chr3:34458054-34457870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 179, 0 | 
| Conread position: | 783-975 | 
| Cow position: | chr3:2867948-2867756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-979 | 
| Cow position: | chr3:55245151-55245347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-990 | 
| Cow position: | chr3:20888842-20888635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-998 | 
| Cow position: | chr3:18461326-18461112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 0 | 
| Conread position: | 783-1012 | 
| Cow position: | chr3:36402415-36402646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 169, 0 | 
| Conread position: | 783-1014 | 
| Cow position: | chr3:5886311-5886542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-1015 | 
| Cow position: | chr3:31748471-31748697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 783-1016 | 
| Cow position: | chr3:29644170-29644395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 783-1016 | 
| Cow position: | chr3:34347268-34347035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 18 | 
| Conread position: | 783-1026 | 
| Cow position: | chr3:14467066-14466822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 173, 74 | 
| Conread position: | 783-1027 | 
| Cow position: | chr3:36594635-36594879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-1032 | 
| Cow position: | chr3:41082975-41083224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-1035 | 
| Cow position: | chr3:34015154-34015406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-1040 | 
| Cow position: | chr3:19795410-19795153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-1040 | 
| Cow position: | chr3:53518648-53518905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-1052 | 
| Cow position: | chr3:2852669-2852393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 126, 243 | 
| Conread position: | 783-1054 | 
| Cow position: | chr3:32326610-32326343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 75, 134 | 
| Conread position: | 783-1055 | 
| Cow position: | chr3:74852482-74852213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 783-1056 | 
| Cow position: | chr3:63000546-63000273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 783-1060 | 
| Cow position: | chr3:24586417-24586140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 92 | 
| Conread position: | 783-1060 | 
| Cow position: | chr3:42977772-42977494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1060 | 
| Cow position: | chr3:50461163-50461420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 265, 107 | 
| Conread position: | 783-1065 | 
| Cow position: | chr3:23010184-23010467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 783-1066 | 
| Cow position: | chr3:11182135-11181856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 271, 65 | 
| Conread position: | 783-1069 | 
| Cow position: | chr3:46505580-46505867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 783-1070 | 
| Cow position: | chr3:79592957-79593245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 6e-38 | 
| Alignm gaps (pig, cow): | 231, 114 | 
| Conread position: | 783-1075 | 
| Cow position: | chr3:28435887-28435594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1075 | 
| Cow position: | chr3:41314890-41315180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 227, 117 | 
| Conread position: | 783-1076 | 
| Cow position: | chr3:45568023-45568316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 178, 107 | 
| Conread position: | 783-1076 | 
| Cow position: | chr3:47078802-47078507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 254, 0 | 
| Conread position: | 783-1076 | 
| Cow position: | chr3:68889760-68889466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 783-1077 | 
| Cow position: | chr3:227061-226769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 102 | 
| Conread position: | 783-1077 | 
| Cow position: | chr3:2904627-2904336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 68, 129 | 
| Conread position: | 783-1077 | 
| Cow position: | chr3:22724957-22724663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 177, 64 | 
| Conread position: | 783-1077 | 
| Cow position: | chr3:32412877-32412582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 18 | 
| Conread position: | 783-1077 | 
| Cow position: | chr3:45977314-45977609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 18 | 
| Conread position: | 783-1077 | 
| Cow position: | chr3:72389785-72390063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 272, 112 | 
| Conread position: | 783-1081 | 
| Cow position: | chr3:37658789-37659095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 88, 116 | 
| Conread position: | 783-1082 | 
| Cow position: | chr3:2790563-2790863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 0 | 
| Conread position: | 783-1082 | 
| Cow position: | chr3:45692213-45691926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 71 | 
| Conread position: | 783-1082 | 
| Cow position: | chr3:61554868-61554568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 136, 37 | 
| Conread position: | 783-1083 | 
| Cow position: | chr3:24351525-24351807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 247, 13 | 
| Conread position: | 783-1083 | 
| Cow position: | chr3:24638223-24638524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 244, 231 | 
| Conread position: | 783-1083 | 
| Cow position: | chr3:28093948-28094250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 128 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:596929-597223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 116 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:6864479-6864774 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 129 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:27783488-27783192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 124 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:27866471-27866770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 210, 35 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:31418347-31418650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 233, 87 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:49336010-49336309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 177, 0 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:49908204-49907919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 271, 61 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:52689565-52689870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 275 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:57455782-57456072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 44 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:63736201-63736502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 263, 163 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:65177822-65178123 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 283 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:66888384-66888082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1084 | 
| Cow position: | chr3:68717896-68717596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 13 | 
| Conread position: | 783-1088 | 
| Cow position: | chr3:29324954-29325260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:1033674-1033981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:2834727-2834420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:2866843-2866536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:2921073-2921376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 100 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:3653474-3653168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 74 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:3837773-3837474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 18 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:5474350-5474658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:6713821-6714126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 35 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:7246292-7245985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:7477109-7476801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:10243473-10243778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 124 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:12253859-12254163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 8.00001e-41 | 
| Alignm gaps (pig, cow): | 73, 161 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:12676817-12676523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 85, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:13276468-13276163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 36 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:13723901-13723593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 194, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:14054085-14054392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 21 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:15416278-15416585 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:16225689-16225996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:18862253-18862559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 146 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:19753916-19753608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:19880863-19881168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 88 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:19941703-19942011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:21004627-21004931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 263, 230 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:21179445-21179140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 133, 45 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:21593096-21593403 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:22338720-22339027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:23287523-23287216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:24263015-24262715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 129, 6 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:24265014-24265317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 260, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:24573349-24573048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 18 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:26743059-26742754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 76 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:30616125-30615818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:31021495-31021801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 71 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:31121331-31121018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 151 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:31396210-31396492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 10, 15 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:31770953-31771249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 97 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:32490901-32490594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:32620229-32619923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 226 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:34087382-34087079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 275, 25 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:34504311-34504004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 190 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:36875255-36874942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:37280207-37280514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:37627707-37628010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 135 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:37893645-37893950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 194 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:37971856-37972153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 35 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:38095711-38096018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:40048701-40049008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:40102035-40101733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:40337331-40337027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 177 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:40826209-40826517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 196, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:41207785-41207478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:42747910-42747603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:43190458-43190151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:43525927-43525620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:44926627-44926932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 133, 81 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:46858471-46858165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 210 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:49463741-49463436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 210 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:49542389-49542082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:49563822-49564135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 249 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:49605627-49605323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:49611396-49611089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:49998950-49999255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 106 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:50204358-50204684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 99, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:50346633-50346942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 30 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:53880455-53880148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 275, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:54654369-54654056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 186 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:56102554-56102859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 9 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:56297196-56297503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:56337142-56336840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 102 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:56485448-56485141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:57481924-57481618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 79 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:57742331-57742632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:62882174-62882479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 47 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:63277041-63276745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 18 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:64376897-64376592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 187 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:64653481-64653787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 194 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:64875598-64875892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 18 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:66623025-66623331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 155 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:66969067-66968760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:68510524-68510217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:68870938-68870631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 275, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:69931022-69930715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:72603018-72603334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:72632882-72633192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:72864225-72863927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 149, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:73304318-73304625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 67, 128 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:74060286-74060588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 74 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:74848353-74848045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:75039030-75038723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:76001143-76000842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 180 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:76864243-76864550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:77581427-77581717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 141, 55 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:81100892-81101197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 124 | 
| Conread position: | 783-1089 | 
| Cow position: | chr3:83767065-83767372 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 0 | 
| Conread position: | 783-1090 | 
| Cow position: | chr3:66830126-66829819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 37 | 
| Conread position: | 783-1094 | 
| Cow position: | chr3:61677357-61677661 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 265, 42 | 
| Conread position: | 783-1096 | 
| Cow position: | chr3:53413848-53414157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 101, 150 | 
| Conread position: | 783-1099 | 
| Cow position: | chr3:56101089-56101393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 191, 83 | 
| Conread position: | 783-1106 | 
| Cow position: | chr3:26595854-26596177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 106 | 
| Conread position: | 783-1106 | 
| Cow position: | chr3:56645518-56645196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 74 | 
| Conread position: | 783-1108 | 
| Cow position: | chr3:16294098-16293771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 133, 128 | 
| Conread position: | 783-1108 | 
| Cow position: | chr3:23204861-23204537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 155 | 
| Conread position: | 783-1108 | 
| Cow position: | chr3:45185170-45184847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 0 | 
| Conread position: | 783-1108 | 
| Cow position: | chr3:56912645-56912972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 252, 20 | 
| Conread position: | 783-1108 | 
| Cow position: | chr3:64171042-64171384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 9.00054e-42 | 
| Alignm gaps (pig, cow): | 223, 62 | 
| Conread position: | 783-1108 | 
| Cow position: | chr3:70097133-70096799 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 222, 17 | 
| Conread position: | 783-1108 | 
| Cow position: | chr3:77426515-77426831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 54 | 
| Conread position: | 783-1109 | 
| Cow position: | chr3:18886277-18886598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 270, 145 | 
| Conread position: | 783-1112 | 
| Cow position: | chr3:64684186-64683868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 239, 25 | 
| Conread position: | 783-1113 | 
| Cow position: | chr3:3060671-3060999 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 243, 85 | 
| Conread position: | 783-1123 | 
| Cow position: | chr3:22084612-22084274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 266, 58 | 
| Conread position: | 783-1126 | 
| Cow position: | chr3:17938190-17937846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 316 | 
| Conread position: | 783-1128 | 
| Cow position: | chr3:65988731-65989077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 18 | 
| Conread position: | 783-1137 | 
| Cow position: | chr3:35611966-35612324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 309 | 
| Conread position: | 783-1140 | 
| Cow position: | chr3:5446100-5445740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 265, 259 | 
| Conread position: | 784-972 | 
| Cow position: | chr3:62794460-62794270 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 784-974 | 
| Cow position: | chr3:73415877-73416066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 33, 23 | 
| Conread position: | 784-1042 | 
| Cow position: | chr3:55108772-55108518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 178, 80 | 
| Conread position: | 784-1064 | 
| Cow position: | chr3:10370814-10371088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 123, 101 | 
| Conread position: | 784-1077 | 
| Cow position: | chr3:19947035-19947328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 241 | 
| Conread position: | 784-1082 | 
| Cow position: | chr3:19108377-19108671 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 272, 183 | 
| Conread position: | 784-1083 | 
| Cow position: | chr3:29129909-29130208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 185 | 
| Conread position: | 784-1083 | 
| Cow position: | chr3:80930439-80930141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 87 | 
| Conread position: | 784-1084 | 
| Cow position: | chr3:522934-523227 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 86 | 
| Conread position: | 784-1085 | 
| Cow position: | chr3:6688624-6688942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 784-1086 | 
| Cow position: | chr3:61173307-61173610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 0 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:6896656-6896945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 69 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:18353546-18353252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 270, 26 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:19798339-19798033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 0 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:19883283-19883589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 105 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:26566590-26566893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 81 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:26992941-26993245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 9 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:32703346-32703057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 185 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:48096272-48095968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 247, 111 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:68697152-68696846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 0 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:70323221-70322919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 91 | 
| Conread position: | 784-1089 | 
| Cow position: | chr3:77706639-77706944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 272, 206 | 
| Conread position: | 785-905 | 
| Cow position: | chr3:35619400-35619519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 785-1009 | 
| Cow position: | chr3:46752434-46752658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 785-1044 | 
| Cow position: | chr3:15987801-15988060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 59 | 
| Conread position: | 785-1076 | 
| Cow position: | chr3:23170379-23170088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 11 | 
| Conread position: | 785-1080 | 
| Cow position: | chr3:48034456-48034164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 273, 16 | 
| Conread position: | 785-1081 | 
| Cow position: | chr3:43417044-43417329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 6e-27 | 
| Alignm gaps (pig, cow): | 29, 62 | 
| Conread position: | 785-1082 | 
| Cow position: | chr3:54568842-54569140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 0 | 
| Conread position: | 785-1084 | 
| Cow position: | chr3:2366076-2365783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 83 | 
| Conread position: | 785-1084 | 
| Cow position: | chr3:7856239-7856538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 229, 252 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:1740059-1739754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 0 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:2708055-2707750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 272, 0 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:3552138-3552441 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 273, 192 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:5951802-5951497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 139 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:20379903-20379598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 16 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:24443280-24442984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 272, 138 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:27222862-27223165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 9.00054e-42 | 
| Alignm gaps (pig, cow): | 45, 147 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:27245874-27245571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 184 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:36171120-36170819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 87, 77 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:39555773-39555469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 287 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:48603065-48603371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 263, 0 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:48845820-48846124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 281 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:54087557-54087247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 229, 266 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:63148822-63148520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 72 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:67545772-67545481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 60 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:74850331-74850028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 177, 79 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:77549789-77550088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 226, 12 | 
| Conread position: | 785-1089 | 
| Cow position: | chr3:78024616-78024317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 272, 220 | 
| Conread position: | 785-1108 | 
| Cow position: | chr3:8098166-8098488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 84, 109 | 
| Conread position: | 785-1108 | 
| Cow position: | chr3:25689469-25689795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 231, 0 | 
| Conread position: | 785-1112 | 
| Cow position: | chr3:48240068-48240394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 108 | 
| Conread position: | 786-905 | 
| Cow position: | chr3:36516827-36516708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 786-933 | 
| Cow position: | chr3:35972918-35973065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 75, 86 | 
| Conread position: | 786-1077 | 
| Cow position: | chr3:83290126-83289839 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 284, 84 | 
| Conread position: | 786-1084 | 
| Cow position: | chr3:31934518-31934224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 71 | 
| Conread position: | 786-1090 | 
| Cow position: | chr3:77084744-77084440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 48, 43 | 
| Conread position: | 787-1067 | 
| Cow position: | chr3:76187348-76187625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 226, 0 | 
| Conread position: | 787-1089 | 
| Cow position: | chr3:20781610-20781316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 207 | 
| Conread position: | 787-1106 | 
| Cow position: | chr3:63239197-63238894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 267, 58 | 
| Conread position: | 788-1089 | 
| Cow position: | chr3:48361755-48362056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 44 | 
| Conread position: | 789-1089 | 
| Cow position: | chr3:42994053-42993758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 73, 119 | 
| Conread position: | 790-1108 | 
| Cow position: | chr3:74141094-74140771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 78, 91 | 
| Conread position: | 792-1109 | 
| Cow position: | chr3:22512138-22512451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 241, 11 | 
| Conread position: | 795-1089 | 
| Cow position: | chr3:77272972-77272677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 259, 0 | 
| Conread position: | 796-1085 | 
| Cow position: | chr3:58128887-58129164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 252, 58 | 
| Conread position: | 796-1089 | 
| Cow position: | chr3:7155982-7155688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 258, 0 | 
| Conread position: | 797-1077 | 
| Cow position: | chr3:4030581-4030857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 172, 0 | 
| Conread position: | 800-1069 | 
| Cow position: | chr3:40297156-40296886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 238, 113 | 
| Conread position: | 800-1108 | 
| Cow position: | chr3:14284563-14284873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 216, 0 | 
| Conread position: | 800-1120 | 
| Cow position: | chr3:58034809-58034487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 301 | 
| Conread position: | 801-1089 | 
| Cow position: | chr3:5497602-5497321 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 0 | 
| Conread position: | 802-1002 | 
| Cow position: | chr3:69434187-69433989 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 62, 82 | 
| Conread position: | 802-1016 | 
| Cow position: | chr3:27921283-27921496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 4.06377e-44 | 
| Alignm gaps (pig, cow): | 29, 161 | 
| Conread position: | 802-1025 | 
| Cow position: | chr3:3790441-3790658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 117, 91 | 
| Conread position: | 802-1035 | 
| Cow position: | chr3:64025488-64025253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 0 | 
| Conread position: | 802-1037 | 
| Cow position: | chr3:23012059-23012291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 212, 122 | 
| Conread position: | 802-1067 | 
| Cow position: | chr3:50941404-50941670 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 252, 0 | 
| Conread position: | 802-1076 | 
| Cow position: | chr3:38869404-38869681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 255, 0 | 
| Conread position: | 802-1077 | 
| Cow position: | chr3:58950293-58950568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 252, 42 | 
| Conread position: | 802-1080 | 
| Cow position: | chr3:46014850-46014570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 131, 42 | 
| Conread position: | 802-1081 | 
| Cow position: | chr3:944526-944803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 255, 157 | 
| Conread position: | 802-1083 | 
| Cow position: | chr3:66651494-66651225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 251, 54 | 
| Conread position: | 802-1084 | 
| Cow position: | chr3:82931462-82931737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 251, 87 | 
| Conread position: | 802-1088 | 
| Cow position: | chr3:29429363-29429081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 158, 112 | 
| Conread position: | 802-1089 | 
| Cow position: | chr3:6528823-6529111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 252, 0 | 
| Conread position: | 802-1089 | 
| Cow position: | chr3:14679918-14680206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 252, 274 | 
| Conread position: | 802-1089 | 
| Cow position: | chr3:20795124-20795412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 252, 0 | 
| Conread position: | 802-1089 | 
| Cow position: | chr3:46224726-46225013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 252, 135 | 
| Conread position: | 802-1089 | 
| Cow position: | chr3:47273049-47272760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 255, 0 | 
| Conread position: | 802-1089 | 
| Cow position: | chr3:50920867-50921158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 55 | 
| Conread position: | 802-1089 | 
| Cow position: | chr3:55373921-55374204 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 87 | 
| Conread position: | 802-1089 | 
| Cow position: | chr3:60178263-60177982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 8.00001e-41 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 802-1090 | 
| Cow position: | chr3:75165254-75164948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 104, 177 | 
| Conread position: | 802-1108 | 
| Cow position: | chr3:6875442-6875143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 76, 0 | 
| Conread position: | 803-1089 | 
| Cow position: | chr3:56148122-56148411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 92 | 
| Conread position: | 804-908 | 
| Cow position: | chr3:27155832-27155936 (view UCSC Genome Browser custom track) | 
| Alignm length: | 105 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 804-1060 | 
| Cow position: | chr3:61277402-61277650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 16, 0 | 
| Conread position: | 804-1108 | 
| Cow position: | chr3:15663604-15663306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 250, 100 | 
| Conread position: | 804-1108 | 
| Cow position: | chr3:33326213-33326519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 61 | 
| Conread position: | 805-1004 | 
| Cow position: | chr3:7354401-7354605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 50, 161 | 
| Conread position: | 805-1016 | 
| Cow position: | chr3:73517743-73517954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 203, 21 | 
| Conread position: | 805-1036 | 
| Cow position: | chr3:57899843-57900076 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 805-1069 | 
| Cow position: | chr3:58026169-58025912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 9e-31 | 
| Alignm gaps (pig, cow): | 158, 61 | 
| Conread position: | 805-1083 | 
| Cow position: | chr3:19831319-19831039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 199, 123 | 
| Conread position: | 805-1087 | 
| Cow position: | chr3:43317404-43317123 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 244, 166 | 
| Conread position: | 805-1089 | 
| Cow position: | chr3:823257-822971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 0 | 
| Conread position: | 805-1089 | 
| Cow position: | chr3:49253347-49253630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 66, 120 | 
| Conread position: | 805-1092 | 
| Cow position: | chr3:43084076-43084364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 249, 0 | 
| Conread position: | 805-1108 | 
| Cow position: | chr3:37349315-37349015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 157, 59 | 
| Conread position: | 805-1118 | 
| Cow position: | chr3:64697663-64697974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 35, 60 | 
| Conread position: | 806-1089 | 
| Cow position: | chr3:40344069-40344353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 250, 0 | 
| Conread position: | 806-1092 | 
| Cow position: | chr3:12798216-12797929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 247, 0 | 
| Conread position: | 806-1108 | 
| Cow position: | chr3:19126108-19126412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 95, 295 | 
| Conread position: | 807-1010 | 
| Cow position: | chr3:55894660-55894863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 114, 103 | 
| Conread position: | 808-1089 | 
| Cow position: | chr3:42846190-42846465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 116 | 
| Conread position: | 809-1069 | 
| Cow position: | chr3:27689311-27689568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 245, 209 | 
| Conread position: | 810-1089 | 
| Cow position: | chr3:24530541-24530820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 8.00001e-41 | 
| Alignm gaps (pig, cow): | 244, 208 | 
| Conread position: | 811-1089 | 
| Cow position: | chr3:72175463-72175187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 243, 118 | 
| Conread position: | 811-1108 | 
| Cow position: | chr3:39233430-39233725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 243, 120 | 
| Conread position: | 812-1080 | 
| Cow position: | chr3:14881683-14881412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 55, 45 | 
| Conread position: | 812-1087 | 
| Cow position: | chr3:77225576-77225850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 242, 161 | 
| Conread position: | 812-1089 | 
| Cow position: | chr3:58952999-58953275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 242, 98 | 
| Conread position: | 813-999 | 
| Cow position: | chr3:57835749-57835563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 813-1034 | 
| Cow position: | chr3:53388759-53388536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 203, 27 | 
| Conread position: | 813-1056 | 
| Cow position: | chr3:49429622-49429863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 100, 0 | 
| Conread position: | 813-1083 | 
| Cow position: | chr3:49134693-49134423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 244, 12 | 
| Conread position: | 813-1084 | 
| Cow position: | chr3:20603010-20602743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 105, 67 | 
| Conread position: | 814-1004 | 
| Cow position: | chr3:51848118-51848308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 814-1034 | 
| Cow position: | chr3:12754627-12754847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 151, 90 | 
| Conread position: | 814-1064 | 
| Cow position: | chr3:14431640-14431398 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 814-1076 | 
| Cow position: | chr3:64317583-64317840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 0 | 
| Conread position: | 814-1089 | 
| Cow position: | chr3:12987173-12986897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 240, 0 | 
| Conread position: | 814-1089 | 
| Cow position: | chr3:26533152-26532885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 8.00001e-41 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 814-1089 | 
| Cow position: | chr3:33269081-33269350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 243, 136 | 
| Conread position: | 814-1089 | 
| Cow position: | chr3:48224219-48223947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 240, 114 | 
| Conread position: | 814-1089 | 
| Cow position: | chr3:73636724-73636999 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 240, 259 | 
| Conread position: | 814-1121 | 
| Cow position: | chr3:49296594-49296900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 154, 52 | 
| Conread position: | 815-1069 | 
| Cow position: | chr3:26751342-26751087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 240, 0 | 
| Conread position: | 815-1087 | 
| Cow position: | chr3:3846113-3845850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 239, 92 | 
| Conread position: | 817-1062 | 
| Cow position: | chr3:66736719-66736474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 9.00054e-42 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 817-1077 | 
| Cow position: | chr3:51069055-51068793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 59, 9 | 
| Conread position: | 817-1087 | 
| Cow position: | chr3:47690843-47691107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 238, 121 | 
| Conread position: | 817-1089 | 
| Cow position: | chr3:82363636-82363904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 237, 66 | 
| Conread position: | 818-1084 | 
| Cow position: | chr3:75840140-75839875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 235, 113 | 
| Conread position: | 819-1082 | 
| Cow position: | chr3:77447842-77448100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 239, 88 | 
| Conread position: | 819-1089 | 
| Cow position: | chr3:30321097-30321376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 819-1108 | 
| Cow position: | chr3:3983960-3984246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 97, 91 | 
| Conread position: | 820-1068 | 
| Cow position: | chr3:60142869-60143113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 234, 37 | 
| Conread position: | 820-1089 | 
| Cow position: | chr3:52150437-52150167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 234, 0 | 
| Conread position: | 820-1089 | 
| Cow position: | chr3:72669713-72669443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 237, 0 | 
| Conread position: | 820-1108 | 
| Cow position: | chr3:21222870-21222579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 196, 0 | 
| Conread position: | 820-1118 | 
| Cow position: | chr3:57554627-57554922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 234, 18 | 
| Conread position: | 821-1090 | 
| Cow position: | chr3:68402820-68402557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 233, 29 | 
| Conread position: | 822-1089 | 
| Cow position: | chr3:56153157-56153418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 85, 145 | 
| Conread position: | 824-1089 | 
| Cow position: | chr3:6837882-6838148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 234, 0 | 
| Conread position: | 826-1016 | 
| Cow position: | chr3:63689035-63688844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 137, 0 | 
| Conread position: | 829-1089 | 
| Cow position: | chr3:72105804-72105540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 136, 195 | 
| Conread position: | 830-1060 | 
| Cow position: | chr3:54765868-54766099 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 6e-27 | 
| Alignm gaps (pig, cow): | 186, 62 | 
| Conread position: | 830-1095 | 
| Cow position: | chr3:52202537-52202795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 121, 139 | 
| Conread position: | 833-1047 | 
| Cow position: | chr3:36614367-36614153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 833-1089 | 
| Cow position: | chr3:70914405-70914144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 834-1076 | 
| Cow position: | chr3:45311656-45311898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 220, 13 | 
| Conread position: | 834-1077 | 
| Cow position: | chr3:27547583-27547342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 109, 54 | 
| Conread position: | 834-1089 | 
| Cow position: | chr3:48215610-48215362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 834-1108 | 
| Cow position: | chr3:35885251-35884983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 128, 91 | 
| Conread position: | 838-1084 | 
| Cow position: | chr3:14258613-14258853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 81, 72 | 
| Conread position: | 838-1088 | 
| Cow position: | chr3:15570311-15570554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 9e-31 | 
| Alignm gaps (pig, cow): | 83, 49 | 
| Conread position: | 844-1084 | 
| Cow position: | chr3:38528938-38528704 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 210, 44 | 
| Conread position: | 844-1089 | 
| Cow position: | chr3:19112101-19111857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 189, 174 | 
| Conread position: | 849-1089 | 
| Cow position: | chr3:52664278-52664516 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 65, 124 | 
| Conread position: | 850-1089 | 
| Cow position: | chr3:30938379-30938615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 204, 77 | 
| Conread position: | 850-1089 | 
| Cow position: | chr3:40521061-40520821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 204, 0 | 
| Conread position: | 850-1089 | 
| Cow position: | chr3:83700440-83700201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 71, 35 | 
| Conread position: | 853-1089 | 
| Cow position: | chr3:11384196-11384437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 854-1089 | 
| Cow position: | chr3:24455633-24455399 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 21 | 
| Conread position: | 856-1084 | 
| Cow position: | chr3:63202130-63202356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 26, 66 | 
| Conread position: | 857-1084 | 
| Cow position: | chr3:52451302-52451529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 136, 106 | 
| Conread position: | 857-1089 | 
| Cow position: | chr3:65473316-65473549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 197, 0 | 
| Conread position: | 858-1075 | 
| Cow position: | chr3:44100935-44101148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 859-1089 | 
| Cow position: | chr3:34027987-34027756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 198, 0 | 
| Conread position: | 871-1089 | 
| Cow position: | chr3:79979288-79979066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 101, 7 | 
| Conread position: | 872-1003 | 
| Cow position: | chr3:44668475-44668344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 132 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 872-1089 | 
| Cow position: | chr3:39856364-39856582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 182, 0 | 
| Conread position: | 873-1089 | 
| Cow position: | chr3:13035594-13035377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 9.00054e-42 | 
| Alignm gaps (pig, cow): | 181, 0 | 
| Conread position: | 874-1077 | 
| Cow position: | chr3:11417449-11417653 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 0 | 
| Conread position: | 874-1089 | 
| Cow position: | chr3:13312103-13311887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 180, 0 | 
| Conread position: | 874-1089 | 
| Cow position: | chr3:35508754-35508971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 159, 0 | 
| Conread position: | 874-1108 | 
| Cow position: | chr3:13115533-13115299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 6e-38 | 
| Alignm gaps (pig, cow): | 180, 55 | 
| Conread position: | 876-1089 | 
| Cow position: | chr3:78519952-78520166 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 877-1089 | 
| Cow position: | chr3:38496697-38496915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 65, 54 | 
| Conread position: | 878-1089 | 
| Cow position: | chr3:44537227-44537024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 176, 33 | 
| Conread position: | 882-1083 | 
| Cow position: | chr3:84198705-84198895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 884-1089 | 
| Cow position: | chr3:68273753-68273959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 4.06377e-44 | 
| Alignm gaps (pig, cow): | 170, 0 | 
| Conread position: | 887-1089 | 
| Cow position: | chr3:48272695-48272900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 9.00054e-42 | 
| Alignm gaps (pig, cow): | 143, 0 | 
| Conread position: | 887-1089 | 
| Cow position: | chr3:48527473-48527678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 25, 152 | 
| Conread position: | 890-1108 | 
| Cow position: | chr3:31224198-31224416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 164, 128 | 
| Conread position: | 895-1077 | 
| Cow position: | chr3:41056864-41057041 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 159, 86 | 
| Conread position: | 896-1016 | 
| Cow position: | chr3:62882852-62882732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 896-1089 | 
| Cow position: | chr3:302156-302350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 158, 0 | 
| Conread position: | 897-1089 | 
| Cow position: | chr3:20475439-20475633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 900-1089 | 
| Cow position: | chr3:41019385-41019195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 154, 0 | 
| Conread position: | 901-1089 | 
| Cow position: | chr3:65877040-65877226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 16, 9 | 
| Conread position: | 904-1069 | 
| Cow position: | chr3:51235510-51235347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 149, 22 | 
| Conread position: | 914-1085 | 
| Cow position: | chr3:38862678-38862844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 140, 110 | 
| Conread position: | 914-1089 | 
| Cow position: | chr3:31051480-31051304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 914-1089 | 
| Cow position: | chr3:39327491-39327667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 140, 0 | 
| Conread position: | 914-1106 | 
| Cow position: | chr3:37021465-37021276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 140, 90 | 
| Conread position: | 914-1108 | 
| Cow position: | chr3:47986384-47986577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 141, 64 | 
| Conread position: | 916-1089 | 
| Cow position: | chr3:4039986-4039813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 138, 52 | 
| Conread position: | 916-1089 | 
| Cow position: | chr3:45615285-45615455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 138, 117 | 
| Conread position: | 919-1087 | 
| Cow position: | chr3:46899726-46899892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 136, 117 | 
| Conread position: | 920-1040 | 
| Cow position: | chr3:22281522-22281402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 920-1076 | 
| Cow position: | chr3:11949737-11949887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 920-1077 | 
| Cow position: | chr3:77466642-77466800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 138, 0 | 
| Conread position: | 920-1084 | 
| Cow position: | chr3:30908756-30908917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 134, 42 | 
| Conread position: | 920-1087 | 
| Cow position: | chr3:7773051-7772883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 134, 0 | 
| Conread position: | 920-1089 | 
| Cow position: | chr3:25056638-25056811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 920-1108 | 
| Cow position: | chr3:27454984-27454795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 49, 28 | 
| Conread position: | 920-1110 | 
| Cow position: | chr3:36671672-36671480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 9e-21 | 
| Alignm gaps (pig, cow): | 138, 0 | 
| Conread position: | 920-1118 | 
| Cow position: | chr3:34557421-34557221 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 134, 0 | 
| Conread position: | 922-1089 | 
| Cow position: | chr3:33125307-33125136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 923-1083 | 
| Cow position: | chr3:24356327-24356487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 132, 30 | 
| Conread position: | 927-1108 | 
| Cow position: | chr3:2508372-2508188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 57, 130 | 
| Conread position: | 927-1108 | 
| Cow position: | chr3:49454573-49454753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 927-1108 | 
| Cow position: | chr3:49732839-49732658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 127, 172 | 
| Conread position: | 928-1061 | 
| Cow position: | chr3:60185226-60185093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 928-1067 | 
| Cow position: | chr3:4161780-4161641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 928-1076 | 
| Cow position: | chr3:21000132-20999984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 928-1083 | 
| Cow position: | chr3:35918521-35918678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 130, 0 | 
| Conread position: | 928-1084 | 
| Cow position: | chr3:2074740-2074896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 126, 65 | 
| Conread position: | 928-1089 | 
| Cow position: | chr3:6442026-6442187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 125, 40 | 
| Conread position: | 928-1089 | 
| Cow position: | chr3:11781990-11781828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 928-1089 | 
| Cow position: | chr3:19215873-19216035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 928-1089 | 
| Cow position: | chr3:49930792-49930954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 126, 0 | 
| Conread position: | 928-1089 | 
| Cow position: | chr3:56696805-56696967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 130, 0 | 
| Conread position: | 928-1108 | 
| Cow position: | chr3:36121132-36121313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 126, 164 | 
| Conread position: | 929-1089 | 
| Cow position: | chr3:42508251-42508090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 125, 0 | 
| Conread position: | 931-1089 | 
| Cow position: | chr3:32412526-32412367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 123, 0 | 
| Conread position: | 932-1089 | 
| Cow position: | chr3:14212351-14212509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 122, 0 | 
| Conread position: | 935-1089 | 
| Cow position: | chr3:23497794-23497639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 119, 0 | 
| Conread position: | 935-1089 | 
| Cow position: | chr3:35619521-35619676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 122, 0 | 
| Conread position: | 936-1069 | 
| Cow position: | chr3:37448171-37448304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 118, 33 | 
| Conread position: | 938-1089 | 
| Cow position: | chr3:14863851-14864003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 6e-27 | 
| Alignm gaps (pig, cow): | 116, 0 | 
| Conread position: | 939-1089 | 
| Cow position: | chr3:45237522-45237369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 115, 0 | 
| Conread position: | 945-1089 | 
| Cow position: | chr3:31423153-31423008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 947-1108 | 
| Cow position: | chr3:30351251-30351413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 9e-31 | 
| Alignm gaps (pig, cow): | 107, 0 | 
| Conread position: | 951-1093 | 
| Cow position: | chr3:51255879-51256022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 956-1089 | 
| Cow position: | chr3:53674236-53674102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 957-1089 | 
| Cow position: | chr3:4191951-4191818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 958-1089 | 
| Cow position: | chr3:45947829-45947697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 961-1084 | 
| Cow position: | chr3:2432663-2432539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 93, 0 | 
| Conread position: | 963-1089 | 
| Cow position: | chr3:79668099-79668229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 74, 0 | 
| Conread position: | 964-1089 | 
| Cow position: | chr3:32768783-32768909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 90, 0 | 
| Conread position: | 964-1089 | 
| Cow position: | chr3:73451321-73451195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 93, 0 | 
| Conread position: | 965-1089 | 
| Cow position: | chr3:55245537-55245662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 969-1089 | 
| Cow position: | chr3:45675780-45675659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 9e-21 | 
| Alignm gaps (pig, cow): | 85, 0 | 
| Conread position: | 980-1089 | 
| Cow position: | chr3:52257506-52257396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 74, 0 | 
Show alignments to all cow chromosomes.
