Cow genome map
| Conread name: | Thy1-THY010012A03 |
| Conread position: | 1-382 |
| Cow position: | chrX:11509896-11509477 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 352 |
| Conread position: | 1-464 |
| Cow position: | chrX:15574070-15574561 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 436 |
| Conread position: | 1-478 |
| Cow position: | chrX:31343001-31342520 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 6 |
| Conread position: | 5-477 |
| Cow position: | chrX:23831638-23832122 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 15-485 |
| Cow position: | chrX:5353505-5353998 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 16-471 |
| Cow position: | chrX:18078109-18078593 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 188 |
| Conread position: | 16-485 |
| Cow position: | chrX:30143484-30143979 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 18-478 |
| Cow position: | chrX:2478829-2479316 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 194 |
| Conread position: | 18-485 |
| Cow position: | chrX:11949694-11950181 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 19-479 |
| Cow position: | chrX:38852955-38852469 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 49 |
| Conread position: | 23-479 |
| Cow position: | chrX:27407676-27408152 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 318 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 34-479 |
| Cow position: | chrX:6544036-6543575 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 167 |
| Conread position: | 34-485 |
| Cow position: | chrX:30180146-30180622 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 308 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 28, 167 |
| Conread position: | 60-477 |
| Cow position: | chrX:12092285-12092714 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 73, 142 |
| Conread position: | 170-404 |
| Cow position: | chrX:7394048-7394283 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 170-477 |
| Cow position: | chrX:41114824-41114513 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 173-464 |
| Cow position: | chrX:5639314-5639613 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 172 |
| Conread position: | 182-440 |
| Cow position: | chrX:31982016-31982281 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 203-479 |
| Cow position: | chrX:40365155-40365433 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 173, 137 |
| Conread position: | 204-464 |
| Cow position: | chrX:10301708-10301446 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 172, 130 |
| Conread position: | 204-475 |
| Cow position: | chrX:1055804-1056074 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 170, 139 |
| Conread position: | 204-478 |
| Cow position: | chrX:40545034-40545311 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 119, 137 |
| Conread position: | 204-479 |
| Cow position: | chrX:2300468-2300190 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 117, 137 |
| Conread position: | 204-479 |
| Cow position: | chrX:7805964-7805687 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 167, 154 |
| Conread position: | 204-479 |
| Cow position: | chrX:17663330-17663609 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 117, 199 |
| Conread position: | 204-480 |
| Cow position: | chrX:4996203-4995924 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 116, 137 |
| Conread position: | 204-486 |
| Cow position: | chrX:24292092-24292375 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 205-453 |
| Cow position: | chrX:41733608-41733856 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 116, 136 |
| Conread position: | 206-463 |
| Cow position: | chrX:38072181-38072442 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 114, 131 |
| Conread position: | 208-485 |
| Cow position: | chrX:865980-865701 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 133 |
| Conread position: | 208-486 |
| Cow position: | chrX:323499-323219 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 112, 133 |
Show alignments to all cow chromosomes.