Cow genome map
| Conread name: | Thy1-THY010013H05 |
| Conread position: | 1-266 |
| Cow position: | chr25:33157058-33156792 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 237 |
| Conread position: | 1-278 |
| Cow position: | chr25:36844625-36844347 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-357 |
| Cow position: | chr25:33127797-33128154 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 1-357 |
| Cow position: | chr25:34769793-34769436 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 236 |
| Conread position: | 3-241 |
| Cow position: | chr25:4657300-4657061 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 195 |
| Conread position: | 3-303 |
| Cow position: | chr25:25652605-25652906 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 9, 222 |
| Conread position: | 3-312 |
| Cow position: | chr25:3636397-3636087 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 3-313 |
| Cow position: | chr25:34473756-34474064 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 109 |
| Conread position: | 3-328 |
| Cow position: | chr25:25652521-25652847 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 189 |
| Conread position: | 3-334 |
| Cow position: | chr25:3664180-3664512 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 9, 222 |
| Conread position: | 3-337 |
| Cow position: | chr25:3676073-3676408 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 189 |
| Conread position: | 3-339 |
| Cow position: | chr25:3664012-3664349 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 3-345 |
| Cow position: | chr25:3664096-3664439 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 3-345 |
| Cow position: | chr25:25652353-25652696 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 3-357 |
| Cow position: | chr25:25652773-25653128 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 9, 132 |
| Conread position: | 3-362 |
| Cow position: | chr25:25652437-25652797 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 6-344 |
| Cow position: | chr25:33298564-33298902 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 130, 138 |
| Conread position: | 6-345 |
| Cow position: | chr25:33298984-33299323 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 7-313 |
| Cow position: | chr25:4657464-4657157 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 7-327 |
| Cow position: | chr25:326499-326819 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-389 |
| Cow position: | chr25:25652862-25653246 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 230, 217 |
| Conread position: | 9-258 |
| Cow position: | chr25:427333-427582 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-262 |
| Cow position: | chr25:33127974-33128227 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-269 |
| Cow position: | chr25:22235917-22236177 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 17, 21 |
| Conread position: | 9-341 |
| Cow position: | chr25:34447278-34447610 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-345 |
| Cow position: | chr25:33157301-33156965 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 21 |
| Conread position: | 9-345 |
| Cow position: | chr25:34769952-34769616 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-347 |
| Cow position: | chr25:34447110-34447448 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 226, 218 |
| Conread position: | 9-349 |
| Cow position: | chr25:22236001-22236341 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 9-354 |
| Cow position: | chr25:33157133-33156788 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 215, 227 |
| Conread position: | 9-357 |
| Cow position: | chr25:23420387-23420735 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 215, 227 |
| Conread position: | 9-357 |
| Cow position: | chr25:33298651-33298999 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 187, 183 |
| Conread position: | 9-357 |
| Cow position: | chr25:34769700-34769352 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 228, 221 |
| Conread position: | 9-421 |
| Cow position: | chr25:33157385-33156971 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 10-269 |
| Cow position: | chr25:34763167-34763426 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-328 |
| Cow position: | chr25:34762834-34763149 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 227, 214 |
| Conread position: | 10-345 |
| Cow position: | chr25:33298904-33299239 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 10-345 |
| Cow position: | chr25:34732603-34732268 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 294, 286 |
| Conread position: | 11-252 |
| Cow position: | chr25:3664357-3664598 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-313 |
| Cow position: | chr25:4657375-4657073 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 11-313 |
| Cow position: | chr25:25652950-25653252 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 180, 185 |
| Conread position: | 11-313 |
| Cow position: | chr25:33530235-33530537 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 11-334 |
| Cow position: | chr25:33529104-33529427 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-335 |
| Cow position: | chr25:25653034-25653358 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 11-341 |
| Cow position: | chr25:34447196-34447526 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 185, 180 |
| Conread position: | 11-345 |
| Cow position: | chr25:3636472-3636138 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 227, 219 |
| Conread position: | 11-345 |
| Cow position: | chr25:3636556-3636222 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 115, 110 |
| Conread position: | 11-345 |
| Cow position: | chr25:33157467-33157133 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 225, 213 |
| Conread position: | 11-345 |
| Cow position: | chr25:34763336-34763667 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 55, 51 |
| Conread position: | 11-347 |
| Cow position: | chr25:33157215-33156879 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 250, 283 |
| Conread position: | 11-357 |
| Cow position: | chr25:25652194-25652540 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 141, 129 |
| Conread position: | 11-357 |
| Cow position: | chr25:34447028-34447374 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-425 |
| Cow position: | chr25:25652278-25652694 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 12-341 |
| Cow position: | chr25:33127725-33128054 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 224, 218 |
| Conread position: | 12-357 |
| Cow position: | chr25:3663938-3664283 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-334 |
| Cow position: | chr25:34763422-34763740 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 220, 35 |
| Conread position: | 15-345 |
| Cow position: | chr25:34733999-34733669 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 15 |
| Conread position: | 17-315 |
| Cow position: | chr25:33529026-33529324 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-298 |
| Cow position: | chr25:33506771-33507041 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 109 |
| Conread position: | 28-339 |
| Cow position: | chr25:3636287-3635976 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 28-339 |
| Cow position: | chr25:3676015-3676326 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 120, 126 |
| Conread position: | 28-339 |
| Cow position: | chr25:25652715-25653026 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-339 |
| Cow position: | chr25:33530336-33530647 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 125, 120 |
| Conread position: | 28-379 |
| Cow position: | chr25:34473530-34473880 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 122, 96 |
| Conread position: | 29-300 |
| Cow position: | chr25:33506856-33507127 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 118 |
| Conread position: | 29-312 |
| Cow position: | chr25:33530505-33530788 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-341 |
| Cow position: | chr25:23420323-23420635 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 195, 207 |
| Conread position: | 29-341 |
| Cow position: | chr25:34770016-34769704 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-343 |
| Cow position: | chr25:3664291-3664604 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 307, 0 |
| Conread position: | 29-350 |
| Cow position: | chr25:23420491-23420812 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 29-382 |
| Cow position: | chr25:34769848-34769493 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 185, 199 |
| Conread position: | 29-421 |
| Cow position: | chr25:33157532-33157139 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 40-384 |
| Cow position: | chr25:33127669-33128015 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 56-357 |
| Cow position: | chr25:36844653-36844352 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 68-357 |
| Cow position: | chr25:22235892-22236181 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 165, 156 |
| Conread position: | 68-357 |
| Cow position: | chr25:34770145-34769856 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-362 |
| Cow position: | chr25:34763141-34763435 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 165, 157 |
| Conread position: | 82-357 |
| Cow position: | chr25:34732615-34732340 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 154, 149 |
| Conread position: | 84-345 |
| Cow position: | chr25:3663926-3664187 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 197, 192 |
| Conread position: | 84-345 |
| Cow position: | chr25:3675987-3676248 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 62 |
| Conread position: | 88-421 |
| Cow position: | chr25:22235827-22236163 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 308 |
| Conread position: | 89-357 |
| Cow position: | chr25:25652188-25652456 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 92-361 |
| Cow position: | chr25:4657462-4657193 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 141, 132 |
| Conread position: | 172-357 |
| Cow position: | chr25:25652187-25652372 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.