Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 3-325 |
| Cow position: | chr1:97622356-97622042 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 23-332 |
| Cow position: | chr1:13195552-13195249 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 23-332 |
| Cow position: | chr1:18414584-18414285 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 38-287 |
| Cow position: | chr1:29916316-29916552 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 38-297 |
| Cow position: | chr1:41735717-41735470 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 43-346 |
| Cow position: | chr1:20581848-20582143 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 44-321 |
| Cow position: | chr1:80764627-80764361 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 44-323 |
| Cow position: | chr1:22777635-22777367 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 46-322 |
| Cow position: | chr1:2765326-2765576 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 62-311 |
| Cow position: | chr1:81161930-81162178 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 104, 28 |
| Conread position: | 63-322 |
| Cow position: | chr1:71136079-71136325 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 60, 88 |
| Conread position: | 63-332 |
| Cow position: | chr1:21679082-21679333 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 65-322 |
| Cow position: | chr1:70389358-70389624 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 175 |
| Conread position: | 65-325 |
| Cow position: | chr1:61737026-61737274 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 228, 57 |
| Conread position: | 65-325 |
| Cow position: | chr1:90423152-90422904 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 65-332 |
| Cow position: | chr1:59650198-59650455 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 66-260 |
| Cow position: | chr1:63038171-63038356 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 66-297 |
| Cow position: | chr1:75347554-75347775 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 66-301 |
| Cow position: | chr1:31390659-31390433 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 132, 79 |
| Conread position: | 66-322 |
| Cow position: | chr1:28678453-28678698 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 66-323 |
| Cow position: | chr1:95765157-95764917 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 213, 56 |
| Conread position: | 66-325 |
| Cow position: | chr1:15902424-15902673 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 66-325 |
| Cow position: | chr1:69415780-69415532 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 66-326 |
| Cow position: | chr1:23099832-23100080 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 86 |
| Conread position: | 66-330 |
| Cow position: | chr1:64189430-64189683 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 48, 88 |
| Conread position: | 66-332 |
| Cow position: | chr1:44746797-44747045 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 212, 49 |
| Conread position: | 66-332 |
| Cow position: | chr1:76096368-76096621 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 89 |
| Conread position: | 66-333 |
| Cow position: | chr1:31190176-31189928 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 215, 88 |
| Conread position: | 66-336 |
| Cow position: | chr1:29975670-29975418 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 66-339 |
| Cow position: | chr1:74947190-74946930 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 66-339 |
| Cow position: | chr1:93110688-93110419 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 66-342 |
| Cow position: | chr1:2997879-2998146 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 199, 88 |
| Conread position: | 66-342 |
| Cow position: | chr1:30066550-30066815 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 66-362 |
| Cow position: | chr1:32341276-32340980 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 111, 32 |
| Conread position: | 67-302 |
| Cow position: | chr1:72731971-72732196 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 78 |
| Conread position: | 67-323 |
| Cow position: | chr1:54216949-54217192 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 212, 48 |
| Conread position: | 67-323 |
| Cow position: | chr1:66355782-66355538 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 211, 63 |
| Conread position: | 68-332 |
| Cow position: | chr1:58825476-58825725 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 216, 6 |
| Conread position: | 70-320 |
| Cow position: | chr1:85141794-85141562 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 211, 41 |
| Conread position: | 70-322 |
| Cow position: | chr1:25793498-25793264 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 199, 41 |
| Conread position: | 77-280 |
| Cow position: | chr1:50345486-50345677 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 71 |
| Conread position: | 79-326 |
| Cow position: | chr1:15314977-15314738 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 80-277 |
| Cow position: | chr1:39121893-39121708 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 82-319 |
| Cow position: | chr1:26427918-26427689 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 82-353 |
| Cow position: | chr1:64218480-64218221 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 208, 63 |
| Conread position: | 83-325 |
| Cow position: | chr1:35843986-35843744 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 187, 46 |
| Conread position: | 97-325 |
| Cow position: | chr1:54289231-54289013 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 187, 62 |
| Conread position: | 136-342 |
| Cow position: | chr1:64624839-64624635 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 148, 128 |
| Conread position: | 145-420 |
| Cow position: | chr1:12227103-12226823 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 149-325 |
| Cow position: | chr1:56643601-56643426 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 154-370 |
| Cow position: | chr1:9958512-9958726 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 156-339 |
| Cow position: | chr1:82076587-82076768 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 144, 15 |
| Conread position: | 159-323 |
| Cow position: | chr1:765252-765085 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 167-341 |
| Cow position: | chr1:92981297-92981470 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 115, 51 |
| Conread position: | 169-322 |
| Cow position: | chr1:50261906-50261753 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 108, 49 |
| Conread position: | 170-322 |
| Cow position: | chr1:29337937-29338090 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 170-323 |
| Cow position: | chr1:80384741-80384587 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 48 |
| Conread position: | 170-325 |
| Cow position: | chr1:79663416-79663256 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 170-325 |
| Cow position: | chr1:82378814-82378969 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 114, 43 |
| Conread position: | 170-329 |
| Cow position: | chr1:96346666-96346507 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 142 |
| Conread position: | 170-339 |
| Cow position: | chr1:75998445-75998279 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 48 |
| Conread position: | 174-280 |
| Cow position: | chr1:82370974-82371079 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 174-319 |
| Cow position: | chr1:83926413-83926560 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 174-322 |
| Cow position: | chr1:59132190-59132041 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 41 |
| Conread position: | 174-325 |
| Cow position: | chr1:6130710-6130562 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 174-325 |
| Cow position: | chr1:90390356-90390202 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 58, 136 |
| Conread position: | 174-326 |
| Cow position: | chr1:70416156-70416307 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 174-326 |
| Cow position: | chr1:95229305-95229151 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 174-332 |
| Cow position: | chr1:24188249-24188406 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 174-332 |
| Cow position: | chr1:38205500-38205655 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 110, 128 |
| Conread position: | 174-332 |
| Cow position: | chr1:45925066-45925226 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 110, 52 |
| Conread position: | 174-342 |
| Cow position: | chr1:46006179-46006012 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 110, 130 |
| Conread position: | 174-342 |
| Cow position: | chr1:62732599-62732762 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 150, 44 |
| Conread position: | 175-323 |
| Cow position: | chr1:43789883-43790030 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 7 |
| Conread position: | 175-333 |
| Cow position: | chr1:33921253-33921095 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 106, 50 |
| Conread position: | 179-321 |
| Cow position: | chr1:93031733-93031591 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 179-325 |
| Cow position: | chr1:39183790-39183645 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 181-345 |
| Cow position: | chr1:34920934-34921095 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 182-324 |
| Cow position: | chr1:97603604-97603462 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 182-325 |
| Cow position: | chr1:71782632-71782492 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 41 |
| Conread position: | 182-332 |
| Cow position: | chr1:53920621-53920772 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 186-346 |
| Cow position: | chr1:87149066-87149233 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 157 |
| Conread position: | 203-325 |
| Cow position: | chr1:19416823-19416702 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 224-346 |
| Cow position: | chr1:57390067-57389941 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.