Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 1-319 |
| Cow position: | chr10:26620732-26620419 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 166 |
| Conread position: | 1-325 |
| Cow position: | chr10:15391337-15391638 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 23-325 |
| Cow position: | chr10:38429705-38429403 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 23-325 |
| Cow position: | chr10:42453974-42454268 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 23-332 |
| Cow position: | chr10:29689480-29689177 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 38-342 |
| Cow position: | chr10:6038462-6038174 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 74, 108 |
| Conread position: | 39-334 |
| Cow position: | chr10:26145544-26145251 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 43-269 |
| Cow position: | chr10:31855213-31855426 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 43-332 |
| Cow position: | chr10:30741259-30741530 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 77, 19 |
| Conread position: | 44-353 |
| Cow position: | chr10:10124224-10124520 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 229, 68 |
| Conread position: | 50-342 |
| Cow position: | chr10:23949036-23948754 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 62-342 |
| Cow position: | chr10:69225823-69226097 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 65-301 |
| Cow position: | chr10:15874174-15873952 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 65-325 |
| Cow position: | chr10:19590863-19590615 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 238, 78 |
| Conread position: | 65-325 |
| Cow position: | chr10:56705686-56705437 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 216, 49 |
| Conread position: | 66-319 |
| Cow position: | chr10:49624667-49624910 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 215, 60 |
| Conread position: | 66-332 |
| Cow position: | chr10:6490863-6490611 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 56, 74 |
| Conread position: | 66-332 |
| Cow position: | chr10:9568724-9568473 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 66-332 |
| Cow position: | chr10:41984986-41984731 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 218, 88 |
| Conread position: | 66-332 |
| Cow position: | chr10:62325517-62325766 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 66-333 |
| Cow position: | chr10:23096880-23096624 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 66-333 |
| Cow position: | chr10:45606521-45606277 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 66-333 |
| Cow position: | chr10:48255321-48255064 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 215, 49 |
| Conread position: | 66-339 |
| Cow position: | chr10:16683908-16683643 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 81 |
| Conread position: | 66-340 |
| Cow position: | chr10:8413150-8412890 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 66-350 |
| Cow position: | chr10:17863485-17863757 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 79 |
| Conread position: | 66-352 |
| Cow position: | chr10:19704612-19704332 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 199, 81 |
| Conread position: | 66-356 |
| Cow position: | chr10:24786008-24786290 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 67-319 |
| Cow position: | chr10:52589788-52589538 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 72-325 |
| Cow position: | chr10:11404228-11403991 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 78-324 |
| Cow position: | chr10:65072206-65071970 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 18, 8 |
| Conread position: | 82-302 |
| Cow position: | chr10:38518709-38518506 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 161, 37 |
| Conread position: | 89-260 |
| Cow position: | chr10:16599101-16598934 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 149-332 |
| Cow position: | chr10:11497195-11497377 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 168-332 |
| Cow position: | chr10:61426744-61426579 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 113, 50 |
| Conread position: | 169-321 |
| Cow position: | chr10:9794669-9794518 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 49 |
| Conread position: | 169-325 |
| Cow position: | chr10:32560693-32560850 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 115, 16 |
| Conread position: | 170-325 |
| Cow position: | chr10:52244654-52244498 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 114, 50 |
| Conread position: | 170-332 |
| Cow position: | chr10:1108471-1108307 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 173-323 |
| Cow position: | chr10:58608098-58608249 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 108, 45 |
| Conread position: | 174-331 |
| Cow position: | chr10:52069977-52069820 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 175-314 |
| Cow position: | chr10:38449313-38449175 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 109, 57 |
| Conread position: | 175-323 |
| Cow position: | chr10:49586469-49586319 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 177-325 |
| Cow position: | chr10:16386205-16386065 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 178-333 |
| Cow position: | chr10:45614108-45613954 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 179-323 |
| Cow position: | chr10:11316955-11317099 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 100, 65 |
| Conread position: | 179-325 |
| Cow position: | chr10:27538504-27538648 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 105, 39 |
| Conread position: | 179-337 |
| Cow position: | chr10:52889233-52889074 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 39 |
| Conread position: | 182-303 |
| Cow position: | chr10:2267041-2266920 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 182-325 |
| Cow position: | chr10:9341731-9341587 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 182-325 |
| Cow position: | chr10:45299816-45299956 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 100, 36 |
| Conread position: | 182-332 |
| Cow position: | chr10:68566184-68566328 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 193-322 |
| Cow position: | chr10:64364232-64364363 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.