Cow genome map

Conread name: Thy1-THY010099F01

Conread position: 22-321
Cow position: chr11:7683816-7684108 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 35, 17

Conread position: 24-325
Cow position: chr11:5648608-5648894 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 24, 15

Conread position: 25-333
Cow position: chr11:84795883-84795586 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 26, 14

Conread position: 38-342
Cow position: chr11:11752638-11752342 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 29, 78

Conread position: 39-332
Cow position: chr11:9368710-9368988 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 150, 18

Conread position: 43-320
Cow position: chr11:47566054-47565787 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 192
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 74, 95

Conread position: 43-342
Cow position: chr11:54244562-54244844 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 26, 9

Conread position: 59-342
Cow position: chr11:69402350-69402079 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 9, 88

Conread position: 65-325
Cow position: chr11:56821343-56821087 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 94

Conread position: 66-303
Cow position: chr11:20491480-20491700 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 57, 33

Conread position: 66-318
Cow position: chr11:50951463-50951703 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 56, 94

Conread position: 66-325
Cow position: chr11:21136721-21136969 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 218, 49

Conread position: 66-325
Cow position: chr11:37372217-37372466 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 69

Conread position: 66-325
Cow position: chr11:45889873-45890114 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 207, 45

Conread position: 66-331
Cow position: chr11:7143335-7143615 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 52, 161

Conread position: 66-332
Cow position: chr11:14308545-14308797 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 54, 78

Conread position: 66-332
Cow position: chr11:67871696-67871441 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 48, 23

Conread position: 66-333
Cow position: chr11:8828721-8828467 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 218, 91

Conread position: 66-333
Cow position: chr11:27681407-27681664 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 89

Conread position: 66-333
Cow position: chr11:50937839-50937575 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 192
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 178, 19

Conread position: 66-339
Cow position: chr11:38845354-38845098 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 212, 61

Conread position: 66-339
Cow position: chr11:52832808-52832557 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 212, 52

Conread position: 66-339
Cow position: chr11:77683076-77683341 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 82

Conread position: 66-342
Cow position: chr11:41272044-41272308 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 218, 49

Conread position: 66-347
Cow position: chr11:32439043-32438774 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 48, 23

Conread position: 66-347
Cow position: chr11:64904906-64905173 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 225, 56

Conread position: 67-333
Cow position: chr11:34946163-34945908 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 210, 78

Conread position: 69-336
Cow position: chr11:9055870-9056126 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 44, 85

Conread position: 76-323
Cow position: chr11:50953648-50953410 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 203, 37

Conread position: 80-325
Cow position: chr11:19259592-19259357 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 201, 73

Conread position: 80-325
Cow position: chr11:43646492-43646255 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 198, 46

Conread position: 83-339
Cow position: chr11:16233017-16232762 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 121, 41

Conread position: 92-332
Cow position: chr11:11785265-11785495 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 30, 23

Conread position: 136-344
Cow position: chr11:48900880-48900663 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 35, 13

Conread position: 144-325
Cow position: chr11:373169-372989 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 41, 14

Conread position: 151-342
Cow position: chr11:56796547-56796357 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 133, 26

Conread position: 154-338
Cow position: chr11:76851852-76851669 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 35, 49

Conread position: 159-332
Cow position: chr11:7333122-7332950 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 40, 9

Conread position: 169-322
Cow position: chr11:31422729-31422883 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 112, 51

Conread position: 169-332
Cow position: chr11:5188127-5188288 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 100, 49

Conread position: 169-339
Cow position: chr11:40275603-40275429 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 109, 49

Conread position: 169-339
Cow position: chr11:40279095-40278921 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 109, 49

Conread position: 170-322
Cow position: chr11:63156919-63156772 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 170-325
Cow position: chr11:63508413-63508566 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 119, 45

Conread position: 170-332
Cow position: chr11:52402463-52402625 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 103, 48

Conread position: 173-323
Cow position: chr11:14046074-14045926 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 109, 20

Conread position: 173-332
Cow position: chr11:6729669-6729830 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 11, 54

Conread position: 174-311
Cow position: chr11:14941605-14941469 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 110, 15

Conread position: 174-322
Cow position: chr11:19606317-19606464 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 107, 62

Conread position: 174-324
Cow position: chr11:47193518-47193668 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 105, 21

Conread position: 174-332
Cow position: chr11:27722395-27722555 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 105, 0

Conread position: 174-334
Cow position: chr11:44609568-44609726 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 108, 37

Conread position: 174-339
Cow position: chr11:61427597-61427757 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 110, 49

Conread position: 174-339
Cow position: chr11:65958697-65958532 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 104, 41

Conread position: 174-342
Cow position: chr11:62574006-62573836 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 65, 91

Conread position: 175-325
Cow position: chr11:40269590-40269443 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 109, 20

Conread position: 175-327
Cow position: chr11:39864192-39864350 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 175-342
Cow position: chr11:34136506-34136673 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 116, 42

Conread position: 175-347
Cow position: chr11:696344-696171 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 109, 43

Conread position: 176-325
Cow position: chr11:19501974-19502123 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 105, 41

Conread position: 181-325
Cow position: chr11:32072155-32072298 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 100, 51

Conread position: 181-325
Cow position: chr11:49218338-49218192 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 110, 0

Conread position: 182-332
Cow position: chr11:65988235-65988383 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 99, 30

Conread position: 182-333
Cow position: chr11:24216149-24216300 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 109
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 182-379
Cow position: chr11:34642222-34642023 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 99, 36

Conread position: 185-350
Cow position: chr11:54058005-54058177 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 99, 33

Conread position: 186-332
Cow position: chr11:22009372-22009225 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 95, 140

Conread position: 201-355
Cow position: chr11:33191591-33191437 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 9

Show alignments to all cow chromosomes.