Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 23-325 |
| Cow position: | chr12:27055434-27055737 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 43-325 |
| Cow position: | chr12:25606568-25606841 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 59-339 |
| Cow position: | chr12:24559237-24559507 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 223, 86 |
| Conread position: | 60-296 |
| Cow position: | chr12:4582826-4583051 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 66-302 |
| Cow position: | chr12:27038868-27038631 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 66-325 |
| Cow position: | chr12:30596357-30596603 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 136, 46 |
| Conread position: | 66-325 |
| Cow position: | chr12:33458033-33458274 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 66-332 |
| Cow position: | chr12:25312482-25312234 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 66-342 |
| Cow position: | chr12:18769185-18768921 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 75-340 |
| Cow position: | chr12:5680577-5680832 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 76-302 |
| Cow position: | chr12:32413410-32413627 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 80-302 |
| Cow position: | chr12:31198666-31198877 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 82-323 |
| Cow position: | chr12:5658845-5658614 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 83-347 |
| Cow position: | chr12:29691298-29691037 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 91, 35 |
| Conread position: | 156-325 |
| Cow position: | chr12:11081135-11080965 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 123, 59 |
| Conread position: | 169-332 |
| Cow position: | chr12:42477987-42478151 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 92 |
| Conread position: | 170-312 |
| Cow position: | chr12:31528877-31528734 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 48 |
| Conread position: | 171-321 |
| Cow position: | chr12:8981074-8980924 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 113, 130 |
| Conread position: | 174-325 |
| Cow position: | chr12:12331528-12331375 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 174-325 |
| Cow position: | chr12:39781357-39781206 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 174-341 |
| Cow position: | chr12:25933667-25933832 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 46 |
| Conread position: | 174-348 |
| Cow position: | chr12:47486815-47486991 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 175-325 |
| Cow position: | chr12:10763240-10763399 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 176-325 |
| Cow position: | chr12:16850929-16850781 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 125 |
| Conread position: | 181-342 |
| Cow position: | chr12:44908005-44908167 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 182-325 |
| Cow position: | chr12:11520163-11520307 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 82 |
| Conread position: | 182-326 |
| Cow position: | chr12:40716054-40715913 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 182-332 |
| Cow position: | chr12:3816471-3816628 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 184-322 |
| Cow position: | chr12:32264413-32264274 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 191-332 |
| Cow position: | chr12:24681818-24681960 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 73 |
| Conread position: | 205-347 |
| Cow position: | chr12:5899524-5899664 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.