Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 1-317 |
| Cow position: | chr13:60650774-60651086 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 1-342 |
| Cow position: | chr13:54094958-54094604 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 6-325 |
| Cow position: | chr13:7010606-7010288 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 18-347 |
| Cow position: | chr13:12233330-12233661 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 43-360 |
| Cow position: | chr13:20180496-20180197 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 44-325 |
| Cow position: | chr13:6621508-6621778 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 180, 66 |
| Conread position: | 52-325 |
| Cow position: | chr13:25435046-25435311 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 111 |
| Conread position: | 65-325 |
| Cow position: | chr13:34995264-34995517 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 81 |
| Conread position: | 65-342 |
| Cow position: | chr13:33160935-33161198 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 66-300 |
| Cow position: | chr13:9082949-9083168 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 66-301 |
| Cow position: | chr13:11834417-11834641 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 67 |
| Conread position: | 66-323 |
| Cow position: | chr13:17346863-17346626 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 218, 26 |
| Conread position: | 66-324 |
| Cow position: | chr13:32167255-32167498 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 66-325 |
| Cow position: | chr13:661583-661824 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 216, 46 |
| Conread position: | 66-325 |
| Cow position: | chr13:9803128-9802881 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 66-332 |
| Cow position: | chr13:20466226-20466480 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 32 |
| Conread position: | 66-338 |
| Cow position: | chr13:1959069-1958805 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 79 |
| Conread position: | 66-340 |
| Cow position: | chr13:22886936-22887191 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 66-342 |
| Cow position: | chr13:11767983-11768249 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 138, 77 |
| Conread position: | 66-342 |
| Cow position: | chr13:13577975-13578238 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 66-342 |
| Cow position: | chr13:49200695-49200431 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 66-346 |
| Cow position: | chr13:15945543-15945267 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 89 |
| Conread position: | 66-350 |
| Cow position: | chr13:47188502-47188228 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 216, 49 |
| Conread position: | 67-325 |
| Cow position: | chr13:10932612-10932368 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 68-353 |
| Cow position: | chr13:15090851-15091124 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 72-342 |
| Cow position: | chr13:30271377-30271117 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 76-341 |
| Cow position: | chr13:21627834-21628083 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 203, 63 |
| Conread position: | 77-321 |
| Cow position: | chr13:23265782-23265548 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 207, 70 |
| Conread position: | 82-321 |
| Cow position: | chr13:58348124-58347902 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 202, 44 |
| Conread position: | 149-325 |
| Cow position: | chr13:26522945-26523124 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 169-332 |
| Cow position: | chr13:8822832-8822675 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 169-342 |
| Cow position: | chr13:58615158-58614979 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 170-341 |
| Cow position: | chr13:47502746-47502912 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 173-333 |
| Cow position: | chr13:58762635-58762796 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 111, 52 |
| Conread position: | 174-314 |
| Cow position: | chr13:11171200-11171061 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 174-332 |
| Cow position: | chr13:39768440-39768276 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 174-339 |
| Cow position: | chr13:29820242-29820409 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 174-341 |
| Cow position: | chr13:33281970-33281801 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 103, 44 |
| Conread position: | 174-345 |
| Cow position: | chr13:32717900-32718073 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 44 |
| Conread position: | 175-319 |
| Cow position: | chr13:52569039-52569185 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 175-325 |
| Cow position: | chr13:32904742-32904592 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 109, 43 |
| Conread position: | 176-347 |
| Cow position: | chr13:57341330-57341504 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 179-339 |
| Cow position: | chr13:17796327-17796165 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 105, 70 |
| Conread position: | 179-342 |
| Cow position: | chr13:17991618-17991451 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 181-325 |
| Cow position: | chr13:54564679-54564825 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 182-302 |
| Cow position: | chr13:25207070-25206949 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 101, 36 |
| Conread position: | 182-342 |
| Cow position: | chr13:20156443-20156282 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 38 |
| Conread position: | 182-342 |
| Cow position: | chr13:34191758-34191920 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 183-378 |
| Cow position: | chr13:40464186-40463987 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 101, 165 |
| Conread position: | 186-332 |
| Cow position: | chr13:46291611-46291461 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 186-337 |
| Cow position: | chr13:22783896-22784043 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 187-322 |
| Cow position: | chr13:56270285-56270422 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 187-322 |
| Cow position: | chr13:56281187-56281050 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 187-342 |
| Cow position: | chr13:26507886-26507731 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 27 |
| Conread position: | 197-332 |
| Cow position: | chr13:23047867-23048004 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 205-352 |
| Cow position: | chr13:19239354-19239210 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 59 |
Show alignments to all cow chromosomes.