Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 1-302 |
| Cow position: | chr15:8230325-8230628 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 156 |
| Conread position: | 2-280 |
| Cow position: | chr15:40498059-40498330 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 64, 125 |
| Conread position: | 6-323 |
| Cow position: | chr15:34255502-34255800 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 23-332 |
| Cow position: | chr15:12170469-12170153 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 23-343 |
| Cow position: | chr15:24976967-24977275 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 23-345 |
| Cow position: | chr15:26933740-26934051 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 38-338 |
| Cow position: | chr15:3572513-3572799 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 39-331 |
| Cow position: | chr15:31616812-31617093 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 111 |
| Conread position: | 43-353 |
| Cow position: | chr15:27863140-27863438 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 238, 29 |
| Conread position: | 44-345 |
| Cow position: | chr15:20482660-20482950 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 46-334 |
| Cow position: | chr15:21836865-21836596 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 52-321 |
| Cow position: | chr15:31545175-31545428 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 63-325 |
| Cow position: | chr15:25689148-25688882 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 239 |
| Conread position: | 66-321 |
| Cow position: | chr15:14758090-14758329 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 180, 65 |
| Conread position: | 66-325 |
| Cow position: | chr15:10570450-10570697 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 66-332 |
| Cow position: | chr15:6749686-6749938 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 66-332 |
| Cow position: | chr15:24285143-24284894 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 66-332 |
| Cow position: | chr15:47821538-47821286 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 154, 70 |
| Conread position: | 66-336 |
| Cow position: | chr15:9970813-9971071 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 218, 48 |
| Conread position: | 66-342 |
| Cow position: | chr15:27247664-27247408 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 67-307 |
| Cow position: | chr15:38323001-38322769 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 79-322 |
| Cow position: | chr15:42195115-42195342 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 35, 69 |
| Conread position: | 80-301 |
| Cow position: | chr15:28177618-28177394 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 30, 140 |
| Conread position: | 80-332 |
| Cow position: | chr15:50177261-50177018 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 82-349 |
| Cow position: | chr15:8022198-8021948 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 94-342 |
| Cow position: | chr15:17788243-17788008 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 113-325 |
| Cow position: | chr15:37918772-37918562 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 171, 10 |
| Conread position: | 156-362 |
| Cow position: | chr15:20778102-20777893 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 167-340 |
| Cow position: | chr15:2201380-2201208 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 116, 51 |
| Conread position: | 170-280 |
| Cow position: | chr15:17911215-17911105 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 170-321 |
| Cow position: | chr15:7059332-7059484 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 174-325 |
| Cow position: | chr15:23109215-23109367 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 174-325 |
| Cow position: | chr15:24411487-24411337 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 15 |
| Conread position: | 174-325 |
| Cow position: | chr15:43612150-43612000 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 108, 58 |
| Conread position: | 174-332 |
| Cow position: | chr15:49237925-49238080 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 110, 46 |
| Conread position: | 174-342 |
| Cow position: | chr15:30958147-30958314 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 174-342 |
| Cow position: | chr15:31483438-31483264 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 176-325 |
| Cow position: | chr15:20402479-20402627 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 45 |
| Conread position: | 176-332 |
| Cow position: | chr15:20370661-20370815 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 180-325 |
| Cow position: | chr15:2117946-2117801 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 38 |
| Conread position: | 182-323 |
| Cow position: | chr15:10189423-10189284 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 97, 36 |
Show alignments to all cow chromosomes.