Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 6-325 |
| Cow position: | chr16:54515568-54515892 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 6-332 |
| Cow position: | chr16:15805826-15806132 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 23-336 |
| Cow position: | chr16:19003214-19002905 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 131 |
| Conread position: | 23-342 |
| Cow position: | chr16:56445536-56445231 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 30, 128 |
| Conread position: | 25-347 |
| Cow position: | chr16:23066531-23066850 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 38-325 |
| Cow position: | chr16:48493077-48493354 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 39-327 |
| Cow position: | chr16:689602-689878 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 39-342 |
| Cow position: | chr16:44270-44554 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 42-320 |
| Cow position: | chr16:36930416-36930150 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 44-332 |
| Cow position: | chr16:16545979-16546248 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 59-332 |
| Cow position: | chr16:44581155-44580896 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 87 |
| Conread position: | 66-301 |
| Cow position: | chr16:37719084-37719308 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 215, 11 |
| Conread position: | 66-323 |
| Cow position: | chr16:53267650-53267894 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 199, 55 |
| Conread position: | 66-325 |
| Cow position: | chr16:18427112-18427353 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 66-325 |
| Cow position: | chr16:18557337-18557090 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 134, 45 |
| Conread position: | 66-325 |
| Cow position: | chr16:51069992-51069742 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 66-332 |
| Cow position: | chr16:45693073-45693323 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 48, 89 |
| Conread position: | 66-346 |
| Cow position: | chr16:11085456-11085190 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 66-395 |
| Cow position: | chr16:15808901-15809220 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 213, 69 |
| Conread position: | 67-333 |
| Cow position: | chr16:27723140-27723411 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 69-326 |
| Cow position: | chr16:38620887-38621129 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 76-323 |
| Cow position: | chr16:27013830-27014072 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 80-321 |
| Cow position: | chr16:28827238-28827008 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 201, 35 |
| Conread position: | 89-277 |
| Cow position: | chr16:56104964-56104790 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 107-342 |
| Cow position: | chr16:22808596-22808365 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 169-325 |
| Cow position: | chr16:30929897-30930052 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 115, 10 |
| Conread position: | 170-321 |
| Cow position: | chr16:5580331-5580484 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 174-300 |
| Cow position: | chr16:23978412-23978285 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 118, 44 |
| Conread position: | 174-311 |
| Cow position: | chr16:44693162-44693025 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 26 |
| Conread position: | 174-311 |
| Cow position: | chr16:47909322-47909183 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 44 |
| Conread position: | 174-325 |
| Cow position: | chr16:50114207-50114361 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 83, 41 |
| Conread position: | 174-341 |
| Cow position: | chr16:16056038-16055873 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 175-334 |
| Cow position: | chr16:56282969-56283127 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 179-325 |
| Cow position: | chr16:228469-228324 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 179-342 |
| Cow position: | chr16:1440458-1440617 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 93, 42 |
| Conread position: | 179-342 |
| Cow position: | chr16:10611598-10611444 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 179-342 |
| Cow position: | chr16:52577484-52577648 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 180-325 |
| Cow position: | chr16:3566191-3566335 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 104, 34 |
| Conread position: | 180-325 |
| Cow position: | chr16:20664317-20664461 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 101, 43 |
| Conread position: | 182-332 |
| Cow position: | chr16:9407849-9407698 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 102, 33 |
| Conread position: | 182-332 |
| Cow position: | chr16:25464085-25464230 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 91, 33 |
| Conread position: | 182-342 |
| Cow position: | chr16:47963320-47963482 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 184-325 |
| Cow position: | chr16:10406550-10406406 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 185-332 |
| Cow position: | chr16:51652698-51652847 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 187-331 |
| Cow position: | chr16:52565454-52565598 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 193-323 |
| Cow position: | chr16:4708861-4708730 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 193-341 |
| Cow position: | chr16:11772209-11772058 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 194-325 |
| Cow position: | chr16:55070480-55070346 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.