Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 1-342 |
| Cow position: | chr17:27505000-27505330 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 6-280 |
| Cow position: | chr17:18569033-18568771 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 50-342 |
| Cow position: | chr17:10634110-10633818 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 66-296 |
| Cow position: | chr17:4085723-4085939 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 191, 49 |
| Conread position: | 66-325 |
| Cow position: | chr17:7614415-7614164 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 66-325 |
| Cow position: | chr17:24880708-24880953 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 216, 48 |
| Conread position: | 66-336 |
| Cow position: | chr17:13716071-13715811 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 76 |
| Conread position: | 77-300 |
| Cow position: | chr17:19891599-19891812 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 39, 69 |
| Conread position: | 89-286 |
| Cow position: | chr17:41892075-41891889 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 134-325 |
| Cow position: | chr17:21730282-21730085 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 155-342 |
| Cow position: | chr17:8093889-8094073 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 123, 63 |
| Conread position: | 159-296 |
| Cow position: | chr17:7595192-7595334 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 161-322 |
| Cow position: | chr17:5380998-5381161 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 168-342 |
| Cow position: | chr17:30236252-30236420 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 113, 11 |
| Conread position: | 169-323 |
| Cow position: | chr17:13229434-13229588 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 49 |
| Conread position: | 170-323 |
| Cow position: | chr17:1328655-1328808 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 109, 50 |
| Conread position: | 170-325 |
| Cow position: | chr17:10769454-10769297 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 174-302 |
| Cow position: | chr17:8215253-8215381 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 174-325 |
| Cow position: | chr17:10314482-10314634 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 110, 46 |
| Conread position: | 174-325 |
| Cow position: | chr17:18829533-18829690 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 174-325 |
| Cow position: | chr17:23147480-23147631 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 174-325 |
| Cow position: | chr17:34870141-34870296 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 174-333 |
| Cow position: | chr17:10220912-10221070 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 44 |
| Conread position: | 174-342 |
| Cow position: | chr17:3620025-3619854 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 110, 75 |
| Conread position: | 174-343 |
| Cow position: | chr17:11655438-11655612 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 174-343 |
| Cow position: | chr17:35387940-35387770 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 132 |
| Conread position: | 174-346 |
| Cow position: | chr17:7163834-7163659 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 174-355 |
| Cow position: | chr17:36818101-36818279 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 175-325 |
| Cow position: | chr17:27819357-27819504 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 175-325 |
| Cow position: | chr17:36173911-36173754 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 43 |
| Conread position: | 175-332 |
| Cow position: | chr17:31798386-31798229 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 106, 42 |
| Conread position: | 175-332 |
| Cow position: | chr17:38139571-38139728 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 94, 43 |
| Conread position: | 176-333 |
| Cow position: | chr17:14278125-14278284 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 179-317 |
| Cow position: | chr17:5041340-5041201 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 182-325 |
| Cow position: | chr17:15922907-15923050 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 191-325 |
| Cow position: | chr17:42775190-42775055 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 29 |
Show alignments to all cow chromosomes.