Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 6-323 |
| Cow position: | chr2:36866923-36866615 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 6-331 |
| Cow position: | chr2:20868414-20868103 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 23-325 |
| Cow position: | chr2:42925170-42925464 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 23-329 |
| Cow position: | chr2:32453649-32453355 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 23-332 |
| Cow position: | chr2:31113737-31114013 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 24-309 |
| Cow position: | chr2:304490-304226 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 257, 15 |
| Conread position: | 32-319 |
| Cow position: | chr2:22859746-22859465 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 203, 20 |
| Conread position: | 38-318 |
| Cow position: | chr2:425717-425980 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 38-321 |
| Cow position: | chr2:14099548-14099818 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 38-325 |
| Cow position: | chr2:81348982-81348704 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 44-325 |
| Cow position: | chr2:72583810-72584094 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 111, 64 |
| Conread position: | 45-325 |
| Cow position: | chr2:38118095-38117832 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 66-275 |
| Cow position: | chr2:30640115-30640317 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 66-277 |
| Cow position: | chr2:70579779-70579580 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 52, 80 |
| Conread position: | 66-295 |
| Cow position: | chr2:15162669-15162887 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 66-302 |
| Cow position: | chr2:48748801-48748575 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 213, 82 |
| Conread position: | 66-306 |
| Cow position: | chr2:50793672-50793900 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 218, 49 |
| Conread position: | 66-318 |
| Cow position: | chr2:18061704-18061464 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 66-321 |
| Cow position: | chr2:24106320-24106560 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 48, 89 |
| Conread position: | 66-323 |
| Cow position: | chr2:26042314-26042068 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 204, 56 |
| Conread position: | 66-325 |
| Cow position: | chr2:31457414-31457661 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 225, 81 |
| Conread position: | 66-325 |
| Cow position: | chr2:51027881-51028127 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 66-325 |
| Cow position: | chr2:67485173-67485417 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 215, 48 |
| Conread position: | 66-327 |
| Cow position: | chr2:10356746-10356504 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 66-330 |
| Cow position: | chr2:4383969-4383719 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 218, 48 |
| Conread position: | 66-332 |
| Cow position: | chr2:20250635-20250886 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 66-332 |
| Cow position: | chr2:39855716-39855963 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 51, 88 |
| Conread position: | 66-334 |
| Cow position: | chr2:72902362-72902104 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 218, 61 |
| Conread position: | 66-339 |
| Cow position: | chr2:1651332-1651586 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 213, 51 |
| Conread position: | 66-339 |
| Cow position: | chr2:4070846-4071108 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 66-339 |
| Cow position: | chr2:33659777-33659514 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 215, 83 |
| Conread position: | 66-341 |
| Cow position: | chr2:17427063-17427360 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 69, 173 |
| Conread position: | 66-342 |
| Cow position: | chr2:13604395-13604660 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 218, 49 |
| Conread position: | 66-345 |
| Cow position: | chr2:31155638-31155905 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 205, 23 |
| Conread position: | 66-383 |
| Cow position: | chr2:20916063-20915765 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 67-302 |
| Cow position: | chr2:41461294-41461520 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 67-332 |
| Cow position: | chr2:6055893-6056143 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 88 |
| Conread position: | 68-302 |
| Cow position: | chr2:33596740-33596507 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 213, 66 |
| Conread position: | 69-323 |
| Cow position: | chr2:41313823-41314059 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 70-325 |
| Cow position: | chr2:70663945-70664191 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 77-323 |
| Cow position: | chr2:29382742-29382507 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 162, 53 |
| Conread position: | 82-342 |
| Cow position: | chr2:51769548-51769798 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 108-323 |
| Cow position: | chr2:25084648-25084857 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 169, 27 |
| Conread position: | 145-325 |
| Cow position: | chr2:36998130-36998308 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 149-314 |
| Cow position: | chr2:67759152-67758992 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 132, 30 |
| Conread position: | 151-311 |
| Cow position: | chr2:42817407-42817570 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 157-338 |
| Cow position: | chr2:2937563-2937743 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 169-325 |
| Cow position: | chr2:38913687-38913844 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 112, 49 |
| Conread position: | 169-342 |
| Cow position: | chr2:56884437-56884609 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 113, 72 |
| Conread position: | 170-320 |
| Cow position: | chr2:64226495-64226645 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 103, 50 |
| Conread position: | 170-338 |
| Cow position: | chr2:50591795-50591970 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 170-342 |
| Cow position: | chr2:62384666-62384493 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 120, 156 |
| Conread position: | 171-323 |
| Cow position: | chr2:42774294-42774447 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 106, 47 |
| Conread position: | 173-326 |
| Cow position: | chr2:51041595-51041439 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 174-311 |
| Cow position: | chr2:29032728-29032867 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 174-321 |
| Cow position: | chr2:46783537-46783685 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 174-327 |
| Cow position: | chr2:68981989-68981834 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 174-332 |
| Cow position: | chr2:45146415-45146575 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 153 |
| Conread position: | 174-342 |
| Cow position: | chr2:8245537-8245708 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 85, 155 |
| Conread position: | 175-329 |
| Cow position: | chr2:64973451-64973606 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 116, 151 |
| Conread position: | 176-336 |
| Cow position: | chr2:78852746-78852589 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 154, 41 |
| Conread position: | 193-325 |
| Cow position: | chr2:46228210-46228077 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 112 |
Show alignments to all cow chromosomes.