Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 1-325 |
| Cow position: | chr29:39023506-39023167 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 40, 166 |
| Conread position: | 1-342 |
| Cow position: | chr29:11366077-11366421 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 23-277 |
| Cow position: | chr29:9938209-9937961 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 23-326 |
| Cow position: | chr29:26298846-26299141 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 25, 130 |
| Conread position: | 49-332 |
| Cow position: | chr29:8862584-8862302 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 50-339 |
| Cow position: | chr29:19907262-19907535 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 59-325 |
| Cow position: | chr29:29302741-29302492 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 192, 21 |
| Conread position: | 65-332 |
| Cow position: | chr29:11005655-11005908 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 65-332 |
| Cow position: | chr29:21265684-21265937 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 219, 70 |
| Conread position: | 66-322 |
| Cow position: | chr29:6772057-6772297 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 66-325 |
| Cow position: | chr29:6207989-6208231 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 218, 81 |
| Conread position: | 66-325 |
| Cow position: | chr29:29559793-29559551 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 66-332 |
| Cow position: | chr29:21186949-21186696 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 218, 82 |
| Conread position: | 66-342 |
| Cow position: | chr29:11071773-11071501 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 120, 51 |
| Conread position: | 67-325 |
| Cow position: | chr29:4367648-4367894 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 67-332 |
| Cow position: | chr29:1340709-1340962 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 212, 15 |
| Conread position: | 68-325 |
| Cow position: | chr29:21675321-21675561 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 70-325 |
| Cow position: | chr29:7663343-7663102 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 92 |
| Conread position: | 70-338 |
| Cow position: | chr29:4444643-4444903 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 82-332 |
| Cow position: | chr29:4691452-4691211 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 162, 36 |
| Conread position: | 83-324 |
| Cow position: | chr29:26985166-26985397 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 83-325 |
| Cow position: | chr29:26317791-26318023 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 198, 62 |
| Conread position: | 83-340 |
| Cow position: | chr29:5616928-5616682 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 198, 21 |
| Conread position: | 89-325 |
| Cow position: | chr29:22895671-22895898 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 169-322 |
| Cow position: | chr29:23742248-23742098 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 170-325 |
| Cow position: | chr29:18021669-18021512 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 170-346 |
| Cow position: | chr29:942835-943014 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 172-325 |
| Cow position: | chr29:21012326-21012175 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 174-277 |
| Cow position: | chr29:36435448-36435551 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-325 |
| Cow position: | chr29:21174686-21174536 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 110, 83 |
| Conread position: | 174-332 |
| Cow position: | chr29:40337519-40337364 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 53 |
| Conread position: | 175-339 |
| Cow position: | chr29:709114-708944 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 175-339 |
| Cow position: | chr29:35442443-35442275 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 176-345 |
| Cow position: | chr29:9662036-9662210 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 108, 45 |
| Conread position: | 178-314 |
| Cow position: | chr29:16055110-16054976 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 179-301 |
| Cow position: | chr29:13127099-13126973 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 179-321 |
| Cow position: | chr29:3050194-3050335 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 110, 28 |
| Conread position: | 180-332 |
| Cow position: | chr29:19607500-19607347 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 184-320 |
| Cow position: | chr29:44135308-44135171 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 100, 48 |
| Conread position: | 184-332 |
| Cow position: | chr29:8794379-8794531 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 197-339 |
| Cow position: | chr29:6150075-6149932 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 84, 23 |
Show alignments to all cow chromosomes.