Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 1-255 |
| Cow position: | chr3:15685098-15684845 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 6-307 |
| Cow position: | chr3:68262608-68262893 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 23-323 |
| Cow position: | chr3:9074483-9074199 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 16 |
| Conread position: | 23-332 |
| Cow position: | chr3:54340571-54340267 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 23-333 |
| Cow position: | chr3:49132207-49131903 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 32-326 |
| Cow position: | chr3:59608362-59608646 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 71 |
| Conread position: | 33-342 |
| Cow position: | chr3:3736162-3736469 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 39-325 |
| Cow position: | chr3:23111628-23111366 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 40-325 |
| Cow position: | chr3:74846832-74846558 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 42-339 |
| Cow position: | chr3:12255358-12255637 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 43-325 |
| Cow position: | chr3:16343479-16343758 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 43-345 |
| Cow position: | chr3:41718273-41718559 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 79, 108 |
| Conread position: | 44-339 |
| Cow position: | chr3:74611445-74611726 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 85, 106 |
| Conread position: | 44-348 |
| Cow position: | chr3:20471484-20471195 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 59-321 |
| Cow position: | chr3:39911161-39910915 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 225, 91 |
| Conread position: | 59-342 |
| Cow position: | chr3:15221625-15221355 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 63-333 |
| Cow position: | chr3:36100735-36100986 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 65-241 |
| Cow position: | chr3:78530435-78530605 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 66-247 |
| Cow position: | chr3:63203331-63203502 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 66-260 |
| Cow position: | chr3:55777936-55778115 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 66-280 |
| Cow position: | chr3:33327608-33327811 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 66-298 |
| Cow position: | chr3:8457557-8457776 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 218, 68 |
| Conread position: | 66-306 |
| Cow position: | chr3:15655244-15655016 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 66-314 |
| Cow position: | chr3:53588483-53588247 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 215, 60 |
| Conread position: | 66-321 |
| Cow position: | chr3:34675623-34675867 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 213, 91 |
| Conread position: | 66-322 |
| Cow position: | chr3:61116954-61116707 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 52, 80 |
| Conread position: | 66-323 |
| Cow position: | chr3:8752690-8752931 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 66-325 |
| Cow position: | chr3:27532754-27532513 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 88 |
| Conread position: | 66-332 |
| Cow position: | chr3:48211392-48211664 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 97, 28 |
| Conread position: | 66-332 |
| Cow position: | chr3:50614540-50614797 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 218, 54 |
| Conread position: | 66-332 |
| Cow position: | chr3:55991964-55991714 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 215, 48 |
| Conread position: | 66-334 |
| Cow position: | chr3:42584443-42584697 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 66-338 |
| Cow position: | chr3:11920136-11919875 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 261, 48 |
| Conread position: | 66-342 |
| Cow position: | chr3:42480519-42480781 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 66-347 |
| Cow position: | chr3:51492684-51492954 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 88 |
| Conread position: | 66-351 |
| Cow position: | chr3:48629690-48629419 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 50, 89 |
| Conread position: | 66-377 |
| Cow position: | chr3:20993714-20994016 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 67-301 |
| Cow position: | chr3:66708167-66707945 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 82 |
| Conread position: | 67-326 |
| Cow position: | chr3:77225019-77225261 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 67-332 |
| Cow position: | chr3:58291989-58291737 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 215, 56 |
| Conread position: | 67-342 |
| Cow position: | chr3:54881664-54881940 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 153, 48 |
| Conread position: | 68-336 |
| Cow position: | chr3:28238667-28238425 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 68-350 |
| Cow position: | chr3:26089099-26088824 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 172, 42 |
| Conread position: | 80-321 |
| Cow position: | chr3:18214226-18213994 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 204, 33 |
| Conread position: | 82-323 |
| Cow position: | chr3:73436524-73436294 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 196, 77 |
| Conread position: | 82-341 |
| Cow position: | chr3:41550459-41550211 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 88-325 |
| Cow position: | chr3:56483436-56483668 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 89-300 |
| Cow position: | chr3:57830163-57829956 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 112-302 |
| Cow position: | chr3:36204492-36204678 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 169, 53 |
| Conread position: | 152-302 |
| Cow position: | chr3:46094799-46094947 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 130, 22 |
| Conread position: | 160-342 |
| Cow position: | chr3:25076183-25076002 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 123, 11 |
| Conread position: | 169-321 |
| Cow position: | chr3:35278567-35278715 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 169-325 |
| Cow position: | chr3:14505923-14505766 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 170-325 |
| Cow position: | chr3:73741877-73741721 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 114, 25 |
| Conread position: | 173-325 |
| Cow position: | chr3:31247661-31247809 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 109, 47 |
| Conread position: | 174-321 |
| Cow position: | chr3:34086058-34085914 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 46 |
| Conread position: | 174-325 |
| Cow position: | chr3:5601170-5601020 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 86 |
| Conread position: | 174-342 |
| Cow position: | chr3:17634046-17633880 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 112, 46 |
| Conread position: | 174-346 |
| Cow position: | chr3:24300357-24300538 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 180-325 |
| Cow position: | chr3:58448062-58447919 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 180-332 |
| Cow position: | chr3:22953881-22953730 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 6, 31 |
| Conread position: | 180-332 |
| Cow position: | chr3:43590894-43591050 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 181-301 |
| Cow position: | chr3:62798781-62798659 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 181-332 |
| Cow position: | chr3:61411124-61411276 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 101, 36 |
| Conread position: | 182-325 |
| Cow position: | chr3:83441546-83441401 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 46 |
| Conread position: | 182-332 |
| Cow position: | chr3:70354233-70354083 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 184-342 |
| Cow position: | chr3:33797686-33797846 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 193-325 |
| Cow position: | chr3:67275114-67274976 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 194-332 |
| Cow position: | chr3:56693250-56693381 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.