Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 3-324 |
| Cow position: | chr4:35870041-35870367 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 24-302 |
| Cow position: | chr4:20279199-20279469 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 38-302 |
| Cow position: | chr4:23166800-23167044 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 43-317 |
| Cow position: | chr4:65116305-65116037 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 16 |
| Conread position: | 43-326 |
| Cow position: | chr4:31172572-31172838 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 80, 23 |
| Conread position: | 43-344 |
| Cow position: | chr4:44665474-44665183 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 50-377 |
| Cow position: | chr4:2121494-2121183 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 195, 68 |
| Conread position: | 52-342 |
| Cow position: | chr4:12560934-12561219 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 191, 14 |
| Conread position: | 62-327 |
| Cow position: | chr4:5797878-5798131 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 62-333 |
| Cow position: | chr4:51122969-51123236 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 86 |
| Conread position: | 63-322 |
| Cow position: | chr4:40823200-40822950 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 63-325 |
| Cow position: | chr4:40433988-40433741 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 63-333 |
| Cow position: | chr4:22235244-22235498 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 66-319 |
| Cow position: | chr4:68795377-68795138 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 66-321 |
| Cow position: | chr4:22115527-22115766 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 66-322 |
| Cow position: | chr4:21073233-21072993 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 218, 44 |
| Conread position: | 66-322 |
| Cow position: | chr4:37880851-37881093 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 66-325 |
| Cow position: | chr4:23758724-23758966 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 66-325 |
| Cow position: | chr4:25972816-25973063 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 53, 88 |
| Conread position: | 66-326 |
| Cow position: | chr4:12697559-12697795 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 66-328 |
| Cow position: | chr4:5913429-5913178 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 218, 79 |
| Conread position: | 66-332 |
| Cow position: | chr4:22249531-22249278 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 215, 53 |
| Conread position: | 66-332 |
| Cow position: | chr4:36945277-36945022 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 66-332 |
| Cow position: | chr4:45918954-45919205 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 88 |
| Conread position: | 66-333 |
| Cow position: | chr4:6208377-6208632 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 80 |
| Conread position: | 66-338 |
| Cow position: | chr4:39767270-39767527 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 66-341 |
| Cow position: | chr4:27997602-27997874 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 40, 67 |
| Conread position: | 66-342 |
| Cow position: | chr4:10992279-10992020 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 213, 47 |
| Conread position: | 73-325 |
| Cow position: | chr4:51605688-51605456 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 73-325 |
| Cow position: | chr4:60030831-60031068 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 209, 46 |
| Conread position: | 80-348 |
| Cow position: | chr4:22449587-22449336 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 198, 43 |
| Conread position: | 123-326 |
| Cow position: | chr4:52225961-52226169 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 156-302 |
| Cow position: | chr4:9198960-9199106 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 161-325 |
| Cow position: | chr4:35471314-35471482 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 169-323 |
| Cow position: | chr4:34762326-34762173 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 169-325 |
| Cow position: | chr4:45115771-45115614 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 169-342 |
| Cow position: | chr4:44279928-44279755 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 110, 52 |
| Conread position: | 170-325 |
| Cow position: | chr4:45234864-45234707 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 170-355 |
| Cow position: | chr4:51433419-51433605 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 174-308 |
| Cow position: | chr4:26373660-26373529 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 174-314 |
| Cow position: | chr4:54797525-54797385 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 174-325 |
| Cow position: | chr4:2169080-2169233 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 174-325 |
| Cow position: | chr4:10836189-10836341 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 107, 144 |
| Conread position: | 174-325 |
| Cow position: | chr4:24432992-24433144 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 107, 46 |
| Conread position: | 174-325 |
| Cow position: | chr4:29709753-29709595 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 41 |
| Conread position: | 174-332 |
| Cow position: | chr4:18956645-18956493 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 174-339 |
| Cow position: | chr4:37035222-37035056 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 110, 47 |
| Conread position: | 179-341 |
| Cow position: | chr4:45871848-45871683 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 116 |
| Conread position: | 182-334 |
| Cow position: | chr4:30131357-30131512 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 182-342 |
| Cow position: | chr4:20599955-20600116 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 99, 6 |
| Conread position: | 182-343 |
| Cow position: | chr4:9800023-9800188 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 191-327 |
| Cow position: | chr4:21862842-21862703 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.