Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 2-363 |
| Cow position: | chr5:31660777-31660423 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 125 |
| Conread position: | 6-341 |
| Cow position: | chr5:29756211-29756551 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 23-341 |
| Cow position: | chr5:27419834-27419516 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 23-347 |
| Cow position: | chr5:48757834-48758162 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 37-325 |
| Cow position: | chr5:1950140-1949859 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 38-322 |
| Cow position: | chr5:30332871-30333146 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 141, 14 |
| Conread position: | 42-338 |
| Cow position: | chr5:58320545-58320260 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 43-332 |
| Cow position: | chr5:58748698-58748973 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 44-341 |
| Cow position: | chr5:39695578-39695868 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 44-343 |
| Cow position: | chr5:39442223-39442512 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 113 |
| Conread position: | 52-311 |
| Cow position: | chr5:26595169-26594914 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 108 |
| Conread position: | 59-302 |
| Cow position: | chr5:18553840-18554068 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 64-323 |
| Cow position: | chr5:23366816-23366572 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 65-341 |
| Cow position: | chr5:25899921-25899658 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 66-243 |
| Cow position: | chr5:35209524-35209362 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 66-255 |
| Cow position: | chr5:21535162-21534984 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 66-277 |
| Cow position: | chr5:4927614-4927418 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 66-302 |
| Cow position: | chr5:23536122-23536356 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 66-302 |
| Cow position: | chr5:27411445-27411225 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 218, 40 |
| Conread position: | 66-302 |
| Cow position: | chr5:54089985-54090213 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 64 |
| Conread position: | 66-321 |
| Cow position: | chr5:17267942-17267699 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 203, 49 |
| Conread position: | 66-325 |
| Cow position: | chr5:27102842-27102595 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 66-325 |
| Cow position: | chr5:34441839-34441582 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 66-325 |
| Cow position: | chr5:49945864-49946104 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 66-332 |
| Cow position: | chr5:17028045-17028301 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 218, 88 |
| Conread position: | 66-332 |
| Cow position: | chr5:41604577-41604829 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 57, 75 |
| Conread position: | 66-339 |
| Cow position: | chr5:66189939-66190201 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 66-346 |
| Cow position: | chr5:31561486-31561748 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 65 |
| Conread position: | 66-354 |
| Cow position: | chr5:28946110-28945832 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 218, 49 |
| Conread position: | 66-371 |
| Cow position: | chr5:23529328-23529039 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 225, 65 |
| Conread position: | 67-325 |
| Cow position: | chr5:29844232-29844479 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 215, 48 |
| Conread position: | 67-328 |
| Cow position: | chr5:7552465-7552219 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 165, 84 |
| Conread position: | 76-323 |
| Cow position: | chr5:36487734-36487498 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 166, 60 |
| Conread position: | 76-348 |
| Cow position: | chr5:15482996-15483257 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 206, 39 |
| Conread position: | 80-325 |
| Cow position: | chr5:34914589-34914358 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 204, 49 |
| Conread position: | 80-325 |
| Cow position: | chr5:48178421-48178183 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 125, 35 |
| Conread position: | 150-326 |
| Cow position: | chr5:18695182-18695355 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 131, 154 |
| Conread position: | 156-339 |
| Cow position: | chr5:47680990-47680802 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 168-302 |
| Cow position: | chr5:75687284-75687150 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 113, 50 |
| Conread position: | 170-325 |
| Cow position: | chr5:23527589-23527431 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 170-325 |
| Cow position: | chr5:62638946-62639103 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 171-371 |
| Cow position: | chr5:17097755-17097954 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 174-313 |
| Cow position: | chr5:61365577-61365723 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 174-322 |
| Cow position: | chr5:42316863-42316719 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 108, 37 |
| Conread position: | 174-323 |
| Cow position: | chr5:58343905-58344055 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 174-332 |
| Cow position: | chr5:18276528-18276683 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 174-333 |
| Cow position: | chr5:25681309-25681151 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 174-338 |
| Cow position: | chr5:21531059-21530892 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 174-341 |
| Cow position: | chr5:48573725-48573568 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 176-325 |
| Cow position: | chr5:63328844-63328701 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 177-341 |
| Cow position: | chr5:21195074-21194905 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 179-337 |
| Cow position: | chr5:27293618-27293457 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 41 |
| Conread position: | 180-325 |
| Cow position: | chr5:5929511-5929658 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 180-342 |
| Cow position: | chr5:3058971-3059133 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 5, 35 |
| Conread position: | 185-325 |
| Cow position: | chr5:39134203-39134061 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 96, 0 |
Show alignments to all cow chromosomes.