Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 1-764 |
| Cow position: | chr6:32412739-32411988 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 124 |
| Conread position: | 5-342 |
| Cow position: | chr6:6596457-6596796 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 6-323 |
| Cow position: | chr6:4022987-4023312 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 6-327 |
| Cow position: | chr6:16625831-16626160 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 23-317 |
| Cow position: | chr6:16675712-16676013 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 23-325 |
| Cow position: | chr6:37612028-37612318 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 43-332 |
| Cow position: | chr6:53673804-53674080 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 44-311 |
| Cow position: | chr6:16733350-16733613 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 126 |
| Conread position: | 46-322 |
| Cow position: | chr6:28164745-28165034 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 59-341 |
| Cow position: | chr6:35775032-35774754 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 76 |
| Conread position: | 59-342 |
| Cow position: | chr6:36194552-36194826 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 20, 70 |
| Conread position: | 62-324 |
| Cow position: | chr6:37462980-37463235 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 200, 56 |
| Conread position: | 65-340 |
| Cow position: | chr6:14658565-14658828 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 65-342 |
| Cow position: | chr6:51294248-51294515 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 143, 80 |
| Conread position: | 65-353 |
| Cow position: | chr6:33929587-33929312 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 66-247 |
| Cow position: | chr6:30474289-30474461 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 66-277 |
| Cow position: | chr6:51387716-51387912 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 66-300 |
| Cow position: | chr6:7173786-7173566 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 215, 49 |
| Conread position: | 66-302 |
| Cow position: | chr6:58331852-58332076 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 66-323 |
| Cow position: | chr6:24623008-24622768 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 66-323 |
| Cow position: | chr6:51840242-51840496 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 66-325 |
| Cow position: | chr6:55475219-55475468 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 218, 77 |
| Conread position: | 66-330 |
| Cow position: | chr6:510332-510087 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 215, 55 |
| Conread position: | 66-332 |
| Cow position: | chr6:36652385-36652637 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 52, 80 |
| Conread position: | 66-332 |
| Cow position: | chr6:56376385-56376133 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 66-332 |
| Cow position: | chr6:65871858-65872106 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 179, 40 |
| Conread position: | 66-333 |
| Cow position: | chr6:48572917-48572662 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 66-335 |
| Cow position: | chr6:63197199-63196938 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 225, 88 |
| Conread position: | 66-342 |
| Cow position: | chr6:47026444-47026707 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 225, 34 |
| Conread position: | 66-342 |
| Cow position: | chr6:54479186-54478917 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 55, 74 |
| Conread position: | 68-325 |
| Cow position: | chr6:24545579-24545826 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 87 |
| Conread position: | 80-341 |
| Cow position: | chr6:13718742-13718993 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 201, 74 |
| Conread position: | 88-325 |
| Cow position: | chr6:2899585-2899353 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 135-352 |
| Cow position: | chr6:48806988-48806775 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 90, 77 |
| Conread position: | 154-332 |
| Cow position: | chr6:30701478-30701661 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 168-320 |
| Cow position: | chr6:10400359-10400208 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 169-332 |
| Cow position: | chr6:15782459-15782295 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 112, 49 |
| Conread position: | 170-332 |
| Cow position: | chr6:15943945-15943782 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 48 |
| Conread position: | 170-332 |
| Cow position: | chr6:64427281-64427445 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 171-332 |
| Cow position: | chr6:31225764-31225927 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 173-325 |
| Cow position: | chr6:36454537-36454383 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 174-325 |
| Cow position: | chr6:53939024-53939176 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 174-332 |
| Cow position: | chr6:25224299-25224459 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 174-332 |
| Cow position: | chr6:38914503-38914660 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 109, 14 |
| Conread position: | 174-342 |
| Cow position: | chr6:46676367-46676202 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 109, 47 |
| Conread position: | 174-353 |
| Cow position: | chr6:47192464-47192286 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 174-354 |
| Cow position: | chr6:12421231-12421050 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 151 |
| Conread position: | 175-325 |
| Cow position: | chr6:11790035-11790188 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 175-325 |
| Cow position: | chr6:20255349-20255194 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 175-332 |
| Cow position: | chr6:59496281-59496434 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 109, 48 |
| Conread position: | 176-342 |
| Cow position: | chr6:49800329-49800495 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 106, 114 |
| Conread position: | 179-332 |
| Cow position: | chr6:36892265-36892114 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 34 |
| Conread position: | 179-338 |
| Cow position: | chr6:58765350-58765189 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 182-332 |
| Cow position: | chr6:41041988-41042136 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 182-338 |
| Cow position: | chr6:17232383-17232228 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 182-342 |
| Cow position: | chr6:37054054-37054213 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 13 |
| Conread position: | 182-342 |
| Cow position: | chr6:54144371-54144533 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 183-325 |
| Cow position: | chr6:53264728-53264589 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 183-342 |
| Cow position: | chr6:7707202-7707361 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 82, 34 |
| Conread position: | 185-348 |
| Cow position: | chr6:24649916-24650075 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 186-322 |
| Cow position: | chr6:39073785-39073923 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 84, 121 |
| Conread position: | 188-333 |
| Cow position: | chr6:1732414-1732564 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 190-332 |
| Cow position: | chr6:1907596-1907739 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 88, 30 |
Show alignments to all cow chromosomes.