Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 6-302 |
| Cow position: | chr8:50266152-50266450 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 6-325 |
| Cow position: | chr8:46850488-46850178 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 6-346 |
| Cow position: | chr8:6469287-6468964 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 23-303 |
| Cow position: | chr8:20892226-20892495 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 23-321 |
| Cow position: | chr8:26922511-26922800 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 27-327 |
| Cow position: | chr8:55829459-55829163 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 114 |
| Conread position: | 38-308 |
| Cow position: | chr8:9811708-9811967 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 252, 28 |
| Conread position: | 38-323 |
| Cow position: | chr8:13738411-13738692 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 39-302 |
| Cow position: | chr8:59507168-59506916 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 27 |
| Conread position: | 43-325 |
| Cow position: | chr8:26228868-26229130 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 45-323 |
| Cow position: | chr8:19171705-19171438 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 59-302 |
| Cow position: | chr8:27294656-27294890 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 63-301 |
| Cow position: | chr8:49599993-49599765 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 65-301 |
| Cow position: | chr8:18368156-18367927 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 226, 70 |
| Conread position: | 65-325 |
| Cow position: | chr8:13813489-13813239 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 214, 81 |
| Conread position: | 66-301 |
| Cow position: | chr8:1107255-1107031 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 66-302 |
| Cow position: | chr8:32984167-32983941 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 218, 87 |
| Conread position: | 66-321 |
| Cow position: | chr8:43693148-43693387 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 191, 92 |
| Conread position: | 66-322 |
| Cow position: | chr8:13975829-13976070 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 66-323 |
| Cow position: | chr8:51905106-51904857 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 84 |
| Conread position: | 66-325 |
| Cow position: | chr8:55305016-55305265 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 48, 68 |
| Conread position: | 66-326 |
| Cow position: | chr8:36505314-36505559 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 213, 61 |
| Conread position: | 66-328 |
| Cow position: | chr8:34287861-34288107 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 68 |
| Conread position: | 66-340 |
| Cow position: | chr8:49265369-49265102 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 57, 90 |
| Conread position: | 66-345 |
| Cow position: | chr8:32827739-32827474 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 82 |
| Conread position: | 66-346 |
| Cow position: | chr8:33219020-33218749 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 66-354 |
| Cow position: | chr8:28221627-28221359 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 215, 64 |
| Conread position: | 67-302 |
| Cow position: | chr8:60320457-60320677 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 68-322 |
| Cow position: | chr8:29935853-29936098 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 68-325 |
| Cow position: | chr8:37487362-37487114 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 69-341 |
| Cow position: | chr8:29413829-29414087 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 70-322 |
| Cow position: | chr8:8134561-8134322 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 54, 90 |
| Conread position: | 82-325 |
| Cow position: | chr8:9583592-9583361 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 83-333 |
| Cow position: | chr8:13810156-13810392 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 156-332 |
| Cow position: | chr8:11594051-11594228 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 156-356 |
| Cow position: | chr8:37122979-37123180 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 170-325 |
| Cow position: | chr8:61216808-61216651 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 173-325 |
| Cow position: | chr8:31645991-31645838 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 111, 40 |
| Conread position: | 173-332 |
| Cow position: | chr8:37114881-37114723 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 173-333 |
| Cow position: | chr8:49576961-49577118 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 174-322 |
| Cow position: | chr8:24426686-24426834 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 108, 47 |
| Conread position: | 174-323 |
| Cow position: | chr8:43803581-43803733 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 174-325 |
| Cow position: | chr8:15686372-15686218 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 174-331 |
| Cow position: | chr8:18743527-18743682 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 175-299 |
| Cow position: | chr8:49510861-49510743 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 175-302 |
| Cow position: | chr8:20832292-20832163 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 175-322 |
| Cow position: | chr8:39017737-39017885 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 175-333 |
| Cow position: | chr8:33510590-33510427 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 90, 147 |
| Conread position: | 175-339 |
| Cow position: | chr8:60949711-60949544 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 179-323 |
| Cow position: | chr8:20682430-20682579 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 179-333 |
| Cow position: | chr8:18175968-18175814 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 179-342 |
| Cow position: | chr8:36274298-36274131 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 182-332 |
| Cow position: | chr8:36471580-36471730 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 182-342 |
| Cow position: | chr8:23030671-23030830 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 99, 124 |
| Conread position: | 182-348 |
| Cow position: | chr8:56033836-56033665 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 182-362 |
| Cow position: | chr8:41318075-41318254 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 184-325 |
| Cow position: | chr8:13900439-13900583 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 184-341 |
| Cow position: | chr8:53866142-53866298 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 184-342 |
| Cow position: | chr8:11510321-11510160 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 79 |
Show alignments to all cow chromosomes.