Cow genome map
| Conread name: | Thy1-THY010099F01 |
| Conread position: | 4-322 |
| Cow position: | chr9:14184828-14184530 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 7-332 |
| Cow position: | chr9:42173008-42173337 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 18-301 |
| Cow position: | chr9:47926081-47925804 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 23-325 |
| Cow position: | chr9:55562661-55562353 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 23-339 |
| Cow position: | chr9:3959223-3958917 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 43-376 |
| Cow position: | chr9:18110741-18111060 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 73, 93 |
| Conread position: | 48-333 |
| Cow position: | chr9:17110891-17110619 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 8 |
| Conread position: | 49-333 |
| Cow position: | chr9:20200414-20200147 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 6 |
| Conread position: | 59-341 |
| Cow position: | chr9:15006637-15006905 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 10, 100 |
| Conread position: | 59-346 |
| Cow position: | chr9:8599716-8599442 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 5, 58 |
| Conread position: | 66-280 |
| Cow position: | chr9:4858641-4858440 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 66-280 |
| Cow position: | chr9:34106824-34106617 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 154, 31 |
| Conread position: | 66-324 |
| Cow position: | chr9:34204234-34203987 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 218, 49 |
| Conread position: | 66-325 |
| Cow position: | chr9:15684682-15684930 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 66-325 |
| Cow position: | chr9:33668832-33668582 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 66-325 |
| Cow position: | chr9:42037758-42037510 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 66-332 |
| Cow position: | chr9:39428694-39428950 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 66-342 |
| Cow position: | chr9:9823403-9823658 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 66-342 |
| Cow position: | chr9:50544525-50544799 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 66-344 |
| Cow position: | chr9:5575421-5575155 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 145, 56 |
| Conread position: | 67-338 |
| Cow position: | chr9:29808558-29808298 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 68-287 |
| Cow position: | chr9:3932062-3931859 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 68-325 |
| Cow position: | chr9:37099131-37099367 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 69-301 |
| Cow position: | chr9:3169419-3169642 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 213, 67 |
| Conread position: | 70-329 |
| Cow position: | chr9:28983283-28983035 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 214, 65 |
| Conread position: | 77-332 |
| Cow position: | chr9:4538765-4539009 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 37, 57 |
| Conread position: | 78-332 |
| Cow position: | chr9:40007949-40007712 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 82-345 |
| Cow position: | chr9:27292189-27292440 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 199, 36 |
| Conread position: | 89-325 |
| Cow position: | chr9:26646009-26645777 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 121-325 |
| Cow position: | chr9:62330936-62331141 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 163, 97 |
| Conread position: | 156-325 |
| Cow position: | chr9:26559584-26559757 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 68 |
| Conread position: | 167-302 |
| Cow position: | chr9:53370177-53370307 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 169-322 |
| Cow position: | chr9:12499024-12498870 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 113, 49 |
| Conread position: | 170-348 |
| Cow position: | chr9:41958773-41958944 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 173, 74 |
| Conread position: | 171-342 |
| Cow position: | chr9:27052622-27052792 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 158 |
| Conread position: | 173-302 |
| Cow position: | chr9:2863453-2863324 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 45 |
| Conread position: | 174-325 |
| Cow position: | chr9:47931125-47930969 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 174-332 |
| Cow position: | chr9:8657422-8657581 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 46 |
| Conread position: | 174-332 |
| Cow position: | chr9:34431829-34431670 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 174-342 |
| Cow position: | chr9:10667017-10667183 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 153, 8 |
| Conread position: | 175-325 |
| Cow position: | chr9:53794521-53794671 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 106, 48 |
| Conread position: | 175-326 |
| Cow position: | chr9:38580862-38580714 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 175-344 |
| Cow position: | chr9:60549404-60549573 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 109, 152 |
| Conread position: | 180-332 |
| Cow position: | chr9:32266385-32266536 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 182-323 |
| Cow position: | chr9:20839629-20839487 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 32 |
| Conread position: | 182-328 |
| Cow position: | chr9:33059271-33059418 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 182-332 |
| Cow position: | chr9:35708618-35708769 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 109, 36 |
| Conread position: | 182-338 |
| Cow position: | chr9:19382331-19382172 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 102, 38 |
Show alignments to all cow chromosomes.