Cow genome map


           Conread name:
           Thy1-THY010121F06
        

               Conread position:
               81-435
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 58
               

               Conread position:
               87-473
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 87
               

               Conread position:
               88-406
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               232
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               78, 87
               

               Conread position:
               88-473
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               88-473
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 63
               

               Conread position:
               89-228
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               89-293
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               168, 77
               

               Conread position:
               89-301
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               89-302
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               89-307
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               117, 14
               

               Conread position:
               89-312
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               76, 171
               

               Conread position:
               89-314
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               89-314
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               89-336
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               89-347
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               75, 220
               

               Conread position:
               89-386
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               75, 89
               

               Conread position:
               89-393
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 76
               

               Conread position:
               89-393
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               224
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               35, 89
               

               Conread position:
               89-411
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 100
               

               Conread position:
               89-412
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 87
               

               Conread position:
               89-416
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 51
               

               Conread position:
               89-417
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 127
               

               Conread position:
               89-428
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               89-431
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               89-437
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 88
               

               Conread position:
               89-444
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               252
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               77, 99
               

               Conread position:
               89-459
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               89-462
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 100
               

               Conread position:
               89-467
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               262
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               69, 74
               

               Conread position:
               89-468
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 75
               

               Conread position:
               89-469
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               272
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               321, 71
               

               Conread position:
               89-469
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               268
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               28, 88
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 77
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 25
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               269
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               75, 95
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 89
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 56
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 93
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               262
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               169, 77
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               92-346
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               186, 73
               

               Conread position:
               92-366
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               74, 68
               

               Conread position:
               92-371
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               172, 0
               

               Conread position:
               92-404
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               72, 85
               

               Conread position:
               92-440
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 85
               

               Conread position:
               92-469
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               92-473
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               267
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               73, 85
               

               Conread position:
               92-473
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 113
               

               Conread position:
               92-473
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 74
               

               Conread position:
               92-473
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 94
               

               Conread position:
               92-473
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 202
               

               Conread position:
               95-301
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               95-306
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               142, 71
               

               Conread position:
               95-347
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               82, 71
               

               Conread position:
               95-468
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               69, 100
               

               Conread position:
               95-469
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 69
               

               Conread position:
               95-469
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 77
               

               Conread position:
               95-473
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 71
               

               Conread position:
               95-473
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               300, 71
               

               Conread position:
               95-474
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               96-435
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 172
               

               Conread position:
               98-391
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               50, 65
               

               Conread position:
               98-417
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               99-412
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               226
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               290, 84
               

               Conread position:
               99-464
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               259
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               65, 214
               

               Conread position:
               100-412
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 271
               

               Conread position:
               107-473
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 156
               

               Conread position:
               112-297
               

               Cow position:
               
               

               Alignm length:
               186
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               112-301
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               112-406
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               104, 63
               

               Conread position:
               113-473
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 132
               

               Conread position:
               115-414
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 59
               

               Conread position:
               115-415
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               120, 50
               

               Conread position:
               115-416
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               206
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               297, 232
               

               Conread position:
               115-417
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               48, 93
               

               Conread position:
               115-469
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 201
               

               Conread position:
               117-416
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 63
               

               Conread position:
               134-473
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 132
               

               Conread position:
               138-473
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               140-439
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               24, 45
               

               Conread position:
               177-417
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               177-469
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               178-386
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               178-414
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               178-473
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 8
               

               Conread position:
               183-473
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               187-335
               

               Cow position:
               
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               15, 50
               

               Conread position:
               188-346
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               195-435
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               226, 120
               

               Conread position:
               213-370
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               226-435
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               164
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               247-445
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               160
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               60, 0
               
Show alignments to all cow chromosomes.