Cow genome map

Conread name: Thy1-THY010121F06

Conread position: 81-435
Cow position: chr10:64182485-64182143 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 58

Conread position: 87-473
Cow position: chr10:11009440-11009077 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 87

Conread position: 88-406
Cow position: chr10:24753176-24752879 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 78, 87

Conread position: 88-473
Cow position: chr10:20132499-20132872 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 88-473
Cow position: chr10:59839256-59839637 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 63

Conread position: 89-228
Cow position: chr10:52881590-52881728 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 88

Conread position: 89-293
Cow position: chr10:47724975-47724777 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 168, 77

Conread position: 89-301
Cow position: chr10:16986360-16986153 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 75, 88

Conread position: 89-302
Cow position: chr10:41254545-41254750 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 89-307
Cow position: chr10:45658173-45657960 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 117, 14

Conread position: 89-312
Cow position: chr10:4184224-4184002 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 76, 171

Conread position: 89-314
Cow position: chr10:48513053-48513275 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 163, 0

Conread position: 89-314
Cow position: chr10:68829256-68829472 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 89-336
Cow position: chr10:45679046-45678803 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 89-347
Cow position: chr10:46492966-46493224 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 75, 220

Conread position: 89-386
Cow position: chr10:24560959-24561246 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 75, 89

Conread position: 89-393
Cow position: chr10:59151836-59152129 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 76

Conread position: 89-393
Cow position: chr10:59843880-59844190 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 35, 89

Conread position: 89-411
Cow position: chr10:5889734-5890054 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 100

Conread position: 89-412
Cow position: chr10:42745946-42745628 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 87

Conread position: 89-416
Cow position: chr10:43438903-43438581 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 51

Conread position: 89-417
Cow position: chr10:17844795-17844479 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 127

Conread position: 89-428
Cow position: chr10:64876548-64876217 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 89-431
Cow position: chr10:56080143-56080476 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 89-437
Cow position: chr10:1423859-1423522 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 88

Conread position: 89-444
Cow position: chr10:41408303-41407970 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 252
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 77, 99

Conread position: 89-459
Cow position: chr10:34430197-34430544 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 89-462
Cow position: chr10:29188327-29188695 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 100

Conread position: 89-467
Cow position: chr10:30441018-30441382 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 74

Conread position: 89-468
Cow position: chr10:54477131-54476765 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 75

Conread position: 89-469
Cow position: chr10:1488860-1488505 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 272
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 321, 71

Conread position: 89-469
Cow position: chr10:12392578-12392938 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 28, 88

Conread position: 89-473
Cow position: chr10:16645158-16645540 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 88

Conread position: 89-473
Cow position: chr10:18042208-18041834 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 77

Conread position: 89-473
Cow position: chr10:22616610-22616989 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 25

Conread position: 89-473
Cow position: chr10:24022253-24022622 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 269
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 75, 95

Conread position: 89-473
Cow position: chr10:38942460-38942089 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 89

Conread position: 89-473
Cow position: chr10:50359945-50359567 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 56

Conread position: 89-473
Cow position: chr10:53336376-53336748 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 93

Conread position: 89-473
Cow position: chr10:59010107-59010487 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 262
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 169, 77

Conread position: 89-473
Cow position: chr10:59675226-59675598 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 92-346
Cow position: chr10:6436085-6435839 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 186, 73

Conread position: 92-366
Cow position: chr10:2853614-2853885 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 185
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 68

Conread position: 92-371
Cow position: chr10:31779243-31779512 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 172, 0

Conread position: 92-404
Cow position: chr10:15318910-15318609 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 72, 85

Conread position: 92-440
Cow position: chr10:31466772-31466431 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 85

Conread position: 92-469
Cow position: chr10:35862202-35862570 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 92-473
Cow position: chr10:25849-25472 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 267
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 73, 85

Conread position: 92-473
Cow position: chr10:16598714-16598343 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 113

Conread position: 92-473
Cow position: chr10:24871190-24870818 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 74

Conread position: 92-473
Cow position: chr10:33891058-33891425 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 94

Conread position: 92-473
Cow position: chr10:52046896-52046520 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 202

Conread position: 95-301
Cow position: chr10:45965522-45965322 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 95-306
Cow position: chr10:4109611-4109409 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 142, 71

Conread position: 95-347
Cow position: chr10:55930220-55929976 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 71

Conread position: 95-468
Cow position: chr10:28721808-28721453 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 262
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 69, 100

Conread position: 95-469
Cow position: chr10:35752939-35753304 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 69

Conread position: 95-469
Cow position: chr10:65423881-65424253 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 77

Conread position: 95-473
Cow position: chr10:15868274-15867897 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 71

Conread position: 95-473
Cow position: chr10:56733056-56732682 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 273
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 300, 71

Conread position: 95-474
Cow position: chr10:44783367-44782994 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 96-435
Cow position: chr10:1088051-1087712 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 172

Conread position: 98-391
Cow position: chr10:6490744-6491037 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 198
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 50, 65

Conread position: 98-417
Cow position: chr10:20372105-20372421 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 99-412
Cow position: chr10:6173376-6173072 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 290, 84

Conread position: 99-464
Cow position: chr10:42637251-42636894 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 259
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 65, 214

Conread position: 100-412
Cow position: chr10:49038602-49038275 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 271

Conread position: 107-473
Cow position: chr10:21462257-21461895 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 156

Conread position: 112-297
Cow position: chr10:4164275-4164093 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 144, 0

Conread position: 112-301
Cow position: chr10:48408385-48408570 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 112-406
Cow position: chr10:24276726-24277024 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 104, 63

Conread position: 113-473
Cow position: chr10:35911742-35912092 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 132

Conread position: 115-414
Cow position: chr10:37444215-37444503 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 59

Conread position: 115-415
Cow position: chr10:41255987-41255700 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 120, 50

Conread position: 115-416
Cow position: chr10:53084176-53083875 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 206
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 297, 232

Conread position: 115-417
Cow position: chr10:25149901-25149602 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 212
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 48, 93

Conread position: 115-469
Cow position: chr10:49045848-49045502 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 201

Conread position: 117-416
Cow position: chr10:22049261-22048963 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 63

Conread position: 134-473
Cow position: chr10:52152512-52152177 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 132

Conread position: 138-473
Cow position: chr10:61588283-61588605 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 140-439
Cow position: chr10:19402916-19402624 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 45

Conread position: 177-417
Cow position: chr10:48259289-48259520 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 10, 0

Conread position: 177-469
Cow position: chr10:57016204-57016481 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 10, 0

Conread position: 178-386
Cow position: chr10:5502967-5502765 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 5, 0

Conread position: 178-414
Cow position: chr10:54936169-54936399 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 5, 0

Conread position: 178-473
Cow position: chr10:46829817-46829534 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 8

Conread position: 183-473
Cow position: chr10:56835219-56834933 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 187-335
Cow position: chr10:8411934-8411787 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 50

Conread position: 188-346
Cow position: chr10:67909567-67909725 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 195-435
Cow position: chr10:16740130-16740367 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 226, 120

Conread position: 213-370
Cow position: chr10:23500303-23500459 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 131, 0

Conread position: 226-435
Cow position: chr10:30914393-30914189 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 164
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 89, 0

Conread position: 247-445
Cow position: chr10:10699635-10699828 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 160
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 60, 0

Show alignments to all cow chromosomes.