Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 86-416 |
| Cow position: | chr12:3056150-3055831 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 88-299 |
| Cow position: | chr12:11587789-11587576 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 172, 95 |
| Conread position: | 88-312 |
| Cow position: | chr12:10491288-10491072 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 88-359 |
| Cow position: | chr12:23574780-23574524 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 6, 87 |
| Conread position: | 88-478 |
| Cow position: | chr12:7000588-7000969 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 319, 86 |
| Conread position: | 89-325 |
| Cow position: | chr12:45680291-45680054 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 89-333 |
| Cow position: | chr12:31948129-31947902 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 133, 74 |
| Conread position: | 89-335 |
| Cow position: | chr12:33976213-33975975 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 222, 76 |
| Conread position: | 89-346 |
| Cow position: | chr12:37190329-37190083 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 76, 86 |
| Conread position: | 89-348 |
| Cow position: | chr12:4162349-4162607 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 143 |
| Conread position: | 89-388 |
| Cow position: | chr12:30661936-30662225 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 275, 76 |
| Conread position: | 89-414 |
| Cow position: | chr12:4866831-4866515 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 95 |
| Conread position: | 89-414 |
| Cow position: | chr12:6410721-6411029 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 89-416 |
| Cow position: | chr12:8943210-8943523 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 89-416 |
| Cow position: | chr12:42160545-42160856 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 258, 73 |
| Conread position: | 89-416 |
| Cow position: | chr12:44517724-44518042 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 313, 77 |
| Conread position: | 89-428 |
| Cow position: | chr12:19664518-19664830 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 89-446 |
| Cow position: | chr12:34465990-34466329 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 77, 60 |
| Conread position: | 89-454 |
| Cow position: | chr12:7978051-7977709 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 89-469 |
| Cow position: | chr12:17881875-17881516 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 77 |
| Conread position: | 89-469 |
| Cow position: | chr12:19154600-19154964 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 89-469 |
| Cow position: | chr12:19508545-19508925 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 262 |
| Conread position: | 89-469 |
| Cow position: | chr12:22515718-22516092 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 121 |
| Conread position: | 89-473 |
| Cow position: | chr12:6210144-6210527 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 76 |
| Conread position: | 89-473 |
| Cow position: | chr12:6241333-6240947 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 111 |
| Conread position: | 89-473 |
| Cow position: | chr12:35310671-35311033 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 89-473 |
| Cow position: | chr12:36313866-36313506 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-473 |
| Cow position: | chr12:40910275-40910650 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 105 |
| Conread position: | 92-341 |
| Cow position: | chr12:18963917-18964158 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 92-347 |
| Cow position: | chr12:18765962-18766216 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 73, 167 |
| Conread position: | 92-405 |
| Cow position: | chr12:11109765-11109478 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 92-406 |
| Cow position: | chr12:9914800-9914496 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 74 |
| Conread position: | 92-428 |
| Cow position: | chr12:35771010-35771348 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 74 |
| Conread position: | 92-441 |
| Cow position: | chr12:35368653-35368309 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 91 |
| Conread position: | 92-469 |
| Cow position: | chr12:28010898-28011255 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 93-473 |
| Cow position: | chr12:45160509-45160869 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 95-343 |
| Cow position: | chr12:12579025-12579256 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 95-347 |
| Cow position: | chr12:5658069-5658311 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 95-378 |
| Cow position: | chr12:42282831-42283102 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 95-416 |
| Cow position: | chr12:37993724-37994028 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 95-473 |
| Cow position: | chr12:42181121-42181498 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 172 |
| Conread position: | 96-319 |
| Cow position: | chr12:25452440-25452655 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 101, 70 |
| Conread position: | 96-370 |
| Cow position: | chr12:5635446-5635705 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 96-473 |
| Cow position: | chr12:27563370-27563737 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 98-388 |
| Cow position: | chr12:34429151-34429418 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 98-453 |
| Cow position: | chr12:34473616-34473947 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 68, 38 |
| Conread position: | 99-340 |
| Cow position: | chr12:28748946-28748706 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 81, 67 |
| Conread position: | 99-414 |
| Cow position: | chr12:3955769-3956076 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 110, 54 |
| Conread position: | 112-366 |
| Cow position: | chr12:23798092-23797850 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 197, 52 |
| Conread position: | 113-466 |
| Cow position: | chr12:31228562-31228232 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 114-473 |
| Cow position: | chr12:36012624-36012981 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 115-416 |
| Cow position: | chr12:8868887-8869185 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 145 |
| Conread position: | 117-428 |
| Cow position: | chr12:26782870-26782566 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 67 |
| Conread position: | 117-472 |
| Cow position: | chr12:2286569-2286221 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 55 |
| Conread position: | 117-473 |
| Cow position: | chr12:11583376-11583046 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 47 |
| Conread position: | 142-345 |
| Cow position: | chr12:38511875-38512075 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 115, 164 |
| Conread position: | 178-376 |
| Cow position: | chr12:28804922-28804730 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 178-473 |
| Cow position: | chr12:26868866-26869156 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 83 |
| Conread position: | 183-473 |
| Cow position: | chr12:21314945-21314662 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 217-415 |
| Cow position: | chr12:3076728-3076925 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 218-440 |
| Cow position: | chr12:31925536-31925327 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 218-473 |
| Cow position: | chr12:20316625-20316866 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 219-444 |
| Cow position: | chr12:9465568-9465791 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 149, 97 |
| Conread position: | 248-468 |
| Cow position: | chr12:31060119-31060335 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 99, 0 |
Show alignments to all cow chromosomes.