Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 19-469 |
| Cow position: | chr13:7663557-7663126 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 87-346 |
| Cow position: | chr13:56605547-56605289 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 115 |
| Conread position: | 87-473 |
| Cow position: | chr13:43762099-43762478 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 76, 87 |
| Conread position: | 88-304 |
| Cow position: | chr13:52929643-52929852 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 88-406 |
| Cow position: | chr13:10924989-10924666 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 78, 204 |
| Conread position: | 88-459 |
| Cow position: | chr13:12546976-12546614 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 79 |
| Conread position: | 89-285 |
| Cow position: | chr13:25380896-25381086 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 89-312 |
| Cow position: | chr13:18999468-18999693 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 75, 135 |
| Conread position: | 89-324 |
| Cow position: | chr13:25495938-25496169 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 89-343 |
| Cow position: | chr13:20231259-20231022 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 72 |
| Conread position: | 89-347 |
| Cow position: | chr13:13338789-13339046 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 89-347 |
| Cow position: | chr13:17338362-17338616 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 77, 71 |
| Conread position: | 89-347 |
| Cow position: | chr13:19188234-19188486 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 228, 85 |
| Conread position: | 89-363 |
| Cow position: | chr13:8652509-8652240 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 77, 183 |
| Conread position: | 89-366 |
| Cow position: | chr13:24230147-24230413 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 253, 75 |
| Conread position: | 89-367 |
| Cow position: | chr13:52055659-52055394 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 89-370 |
| Cow position: | chr13:59170586-59170861 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 165, 77 |
| Conread position: | 89-385 |
| Cow position: | chr13:43919328-43919036 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 143, 85 |
| Conread position: | 89-391 |
| Cow position: | chr13:37593013-37592710 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 219 |
| Conread position: | 89-413 |
| Cow position: | chr13:3315742-3315426 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 92 |
| Conread position: | 89-415 |
| Cow position: | chr13:12614186-12614509 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 89-416 |
| Cow position: | chr13:11060921-11061232 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 120, 82 |
| Conread position: | 89-433 |
| Cow position: | chr13:19023915-19023572 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 97 |
| Conread position: | 89-468 |
| Cow position: | chr13:9142212-9142584 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 98 |
| Conread position: | 89-469 |
| Cow position: | chr13:9975141-9974763 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 84 |
| Conread position: | 89-469 |
| Cow position: | chr13:25435190-25434826 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 92 |
| Conread position: | 89-473 |
| Cow position: | chr13:1043036-1042649 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 172 |
| Conread position: | 89-473 |
| Cow position: | chr13:2413962-2414331 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 75 |
| Conread position: | 89-473 |
| Cow position: | chr13:21275792-21276162 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 89-473 |
| Cow position: | chr13:34375192-34375562 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 271 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 92, 231 |
| Conread position: | 89-473 |
| Cow position: | chr13:36771489-36771115 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 89-473 |
| Cow position: | chr13:37381734-37382118 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 78 |
| Conread position: | 89-473 |
| Cow position: | chr13:46515994-46516369 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 77 |
| Conread position: | 89-473 |
| Cow position: | chr13:60509187-60508816 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 89 |
| Conread position: | 91-347 |
| Cow position: | chr13:11643874-11644115 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 87 |
| Conread position: | 91-473 |
| Cow position: | chr13:17855307-17855679 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 92-295 |
| Cow position: | chr13:25579254-25579053 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 92-309 |
| Cow position: | chr13:20128602-20128813 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 152, 81 |
| Conread position: | 92-321 |
| Cow position: | chr13:4420278-4420508 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 92 |
| Conread position: | 92-367 |
| Cow position: | chr13:61188469-61188736 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 92-473 |
| Cow position: | chr13:12045402-12045034 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 93 |
| Conread position: | 92-473 |
| Cow position: | chr13:40651870-40652240 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 92-473 |
| Cow position: | chr13:41253557-41253933 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 314, 64 |
| Conread position: | 92-482 |
| Cow position: | chr13:6974097-6974481 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 84 |
| Conread position: | 95-304 |
| Cow position: | chr13:28552527-28552739 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 95-380 |
| Cow position: | chr13:2192650-2192922 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 95-387 |
| Cow position: | chr13:5263342-5263065 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 231, 69 |
| Conread position: | 95-468 |
| Cow position: | chr13:17821331-17820958 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 95-469 |
| Cow position: | chr13:42113958-42114320 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 95-473 |
| Cow position: | chr13:45604477-45604105 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 71 |
| Conread position: | 96-464 |
| Cow position: | chr13:25695828-25695470 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 97-452 |
| Cow position: | chr13:13306033-13306390 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 98-473 |
| Cow position: | chr13:17158936-17158557 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 98-473 |
| Cow position: | chr13:53536366-53535996 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 99-428 |
| Cow position: | chr13:19393234-19393547 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 99-472 |
| Cow position: | chr13:17622231-17622590 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 100-417 |
| Cow position: | chr13:9665003-9665326 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 99 |
| Conread position: | 101-417 |
| Cow position: | chr13:33517978-33517673 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 102-306 |
| Cow position: | chr13:14870478-14870674 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 103-309 |
| Cow position: | chr13:39367910-39368103 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 115-417 |
| Cow position: | chr13:52284767-52285066 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 81, 61 |
| Conread position: | 115-440 |
| Cow position: | chr13:6079453-6079145 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 115-469 |
| Cow position: | chr13:19178231-19178576 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 61 |
| Conread position: | 120-473 |
| Cow position: | chr13:61170754-61170417 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 178-413 |
| Cow position: | chr13:60599921-60599695 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 178-473 |
| Cow position: | chr13:32949982-32949699 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 178-473 |
| Cow position: | chr13:34507896-34508183 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 178-494 |
| Cow position: | chr13:32017506-32017194 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 74 |
| Conread position: | 183-472 |
| Cow position: | chr13:21708210-21708487 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 186-473 |
| Cow position: | chr13:6606995-6606713 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 54 |
| Conread position: | 190-401 |
| Cow position: | chr13:18551476-18551683 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 217-473 |
| Cow position: | chr13:37947944-37947708 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 222-473 |
| Cow position: | chr13:60436822-60436576 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 239-467 |
| Cow position: | chr13:13344034-13344256 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 208, 75 |
| Conread position: | 243-386 |
| Cow position: | chr13:31581667-31581526 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 247-420 |
| Cow position: | chr13:8195168-8195335 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.