Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 38-313 |
| Cow position: | chr14:1868442-1868174 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 85-345 |
| Cow position: | chr14:25002020-25002274 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 85-473 |
| Cow position: | chr14:33538950-33538564 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 211 |
| Conread position: | 88-408 |
| Cow position: | chr14:49929755-49929435 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 210 |
| Conread position: | 88-416 |
| Cow position: | chr14:27305133-27305464 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 178 |
| Conread position: | 89-269 |
| Cow position: | chr14:35503352-35503533 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 89-269 |
| Cow position: | chr14:40754257-40754074 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 89-314 |
| Cow position: | chr14:19394351-19394570 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 89-332 |
| Cow position: | chr14:15313551-15313782 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 89-367 |
| Cow position: | chr14:28115197-28114924 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 89-370 |
| Cow position: | chr14:33309513-33309248 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 89-385 |
| Cow position: | chr14:11043501-11043211 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 97 |
| Conread position: | 89-387 |
| Cow position: | chr14:10609670-10609969 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 75, 147 |
| Conread position: | 89-388 |
| Cow position: | chr14:6190940-6190658 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 89-388 |
| Cow position: | chr14:19129496-19129791 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 176 |
| Conread position: | 89-403 |
| Cow position: | chr14:5222301-5221992 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 75, 95 |
| Conread position: | 89-415 |
| Cow position: | chr14:35018763-35018449 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 75, 95 |
| Conread position: | 89-416 |
| Cow position: | chr14:19594147-19593832 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 76, 140 |
| Conread position: | 89-432 |
| Cow position: | chr14:24236815-24237142 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 242, 119 |
| Conread position: | 89-439 |
| Cow position: | chr14:28795662-28796009 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 160 |
| Conread position: | 89-439 |
| Cow position: | chr14:39618386-39618046 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 86 |
| Conread position: | 89-453 |
| Cow position: | chr14:17238342-17238707 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 89-472 |
| Cow position: | chr14:43249578-43249948 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 89-473 |
| Cow position: | chr14:12520312-12519967 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 89-473 |
| Cow position: | chr14:16237522-16237142 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 148 |
| Conread position: | 89-473 |
| Cow position: | chr14:25403945-25403580 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 78 |
| Conread position: | 89-473 |
| Cow position: | chr14:37103200-37103564 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 89-473 |
| Cow position: | chr14:37883926-37883552 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 131 |
| Conread position: | 89-473 |
| Cow position: | chr14:41479672-41479294 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-473 |
| Cow position: | chr14:47609592-47609239 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 89-484 |
| Cow position: | chr14:38168682-38169052 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 92-346 |
| Cow position: | chr14:12324412-12324663 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 137, 216 |
| Conread position: | 92-358 |
| Cow position: | chr14:12667722-12667982 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 105, 85 |
| Conread position: | 92-360 |
| Cow position: | chr14:29029822-29030080 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 124, 9 |
| Conread position: | 92-366 |
| Cow position: | chr14:34983863-34984122 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 92-383 |
| Cow position: | chr14:50055391-50055676 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 139, 61 |
| Conread position: | 92-386 |
| Cow position: | chr14:3868435-3868152 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 92-464 |
| Cow position: | chr14:20010318-20009962 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 92-473 |
| Cow position: | chr14:44742388-44742022 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 94-473 |
| Cow position: | chr14:7558445-7558074 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 7 |
| Conread position: | 95-343 |
| Cow position: | chr14:26191108-26190860 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 95-388 |
| Cow position: | chr14:36289801-36289536 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 95-414 |
| Cow position: | chr14:26097697-26097382 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 95-435 |
| Cow position: | chr14:18485258-18484914 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 257 |
| Conread position: | 95-472 |
| Cow position: | chr14:50362790-50363160 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 69 |
| Conread position: | 95-473 |
| Cow position: | chr14:33326399-33326030 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 71 |
| Conread position: | 95-474 |
| Cow position: | chr14:35420768-35420394 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 92 |
| Conread position: | 97-324 |
| Cow position: | chr14:29592728-29592502 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 97-473 |
| Cow position: | chr14:6599959-6599588 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 99 |
| Conread position: | 98-411 |
| Cow position: | chr14:5630161-5630466 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 78 |
| Conread position: | 100-420 |
| Cow position: | chr14:25385886-25385580 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 106-393 |
| Cow position: | chr14:35498498-35498216 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 119, 155 |
| Conread position: | 107-473 |
| Cow position: | chr14:43453172-43452815 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 112-315 |
| Cow position: | chr14:41966257-41966451 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 112-318 |
| Cow position: | chr14:14580882-14581080 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 112-388 |
| Cow position: | chr14:24981468-24981734 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 112-473 |
| Cow position: | chr14:8101803-8102141 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 113-412 |
| Cow position: | chr14:7482070-7482359 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 82, 53 |
| Conread position: | 115-347 |
| Cow position: | chr14:33643764-33643551 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 115-473 |
| Cow position: | chr14:7959792-7960125 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 130-417 |
| Cow position: | chr14:14280442-14280726 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 177-404 |
| Cow position: | chr14:36151482-36151688 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 177-406 |
| Cow position: | chr14:19624161-19624388 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 178-473 |
| Cow position: | chr14:106500-106211 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 179-464 |
| Cow position: | chr14:46965637-46965916 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 233, 81 |
| Conread position: | 183-469 |
| Cow position: | chr14:6490628-6490341 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 136 |
| Conread position: | 183-472 |
| Cow position: | chr14:20468025-20467749 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 183-472 |
| Cow position: | chr14:46735386-46735680 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 166 |
| Conread position: | 187-417 |
| Cow position: | chr14:19996402-19996627 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 190-370 |
| Cow position: | chr14:50504263-50504087 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 195-361 |
| Cow position: | chr14:26470721-26470882 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 215-469 |
| Cow position: | chr14:27866024-27865777 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 218-460 |
| Cow position: | chr14:19206975-19207216 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 224-469 |
| Cow position: | chr14:47507221-47507465 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 246-381 |
| Cow position: | chr14:37441312-37441182 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 246-381 |
| Cow position: | chr14:37442958-37442828 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 246-415 |
| Cow position: | chr14:19985963-19986131 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 247-406 |
| Cow position: | chr14:4868351-4868195 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 247-473 |
| Cow position: | chr14:13634566-13634341 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 167, 100 |
Show alignments to all cow chromosomes.