Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 88-367 |
| Cow position: | chr15:26573415-26573692 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 76, 87 |
| Conread position: | 88-402 |
| Cow position: | chr15:47821852-47822140 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 312, 18 |
| Conread position: | 88-417 |
| Cow position: | chr15:4534945-4535262 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 88-473 |
| Cow position: | chr15:37381661-37382033 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 6 |
| Conread position: | 88-473 |
| Cow position: | chr15:43626505-43626869 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 77 |
| Conread position: | 89-306 |
| Cow position: | chr15:5726362-5726573 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-312 |
| Cow position: | chr15:39316805-39316580 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 75, 128 |
| Conread position: | 89-347 |
| Cow position: | chr15:9526441-9526182 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 89-367 |
| Cow position: | chr15:225767-225498 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 242, 77 |
| Conread position: | 89-386 |
| Cow position: | chr15:49922171-49922463 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 148, 75 |
| Conread position: | 89-387 |
| Cow position: | chr15:50322631-50322920 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-398 |
| Cow position: | chr15:35945566-35945878 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 86 |
| Conread position: | 89-403 |
| Cow position: | chr15:39621375-39621679 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 89-408 |
| Cow position: | chr15:35417588-35417276 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 89-409 |
| Cow position: | chr15:12723126-12723425 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 89-409 |
| Cow position: | chr15:27973180-27972868 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 89-414 |
| Cow position: | chr15:21893816-21894134 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 89-416 |
| Cow position: | chr15:2953097-2952776 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 82, 147 |
| Conread position: | 89-417 |
| Cow position: | chr15:23768220-23767910 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-467 |
| Cow position: | chr15:22939288-22938931 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 90, 77 |
| Conread position: | 89-473 |
| Cow position: | chr15:6905570-6905963 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 89-473 |
| Cow position: | chr15:15880963-15881332 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 89-473 |
| Cow position: | chr15:17233230-17233595 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 89-473 |
| Cow position: | chr15:20370418-20370061 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 89-473 |
| Cow position: | chr15:20472511-20472135 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 89-473 |
| Cow position: | chr15:32979996-32979623 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 49 |
| Conread position: | 90-342 |
| Cow position: | chr15:41045444-41045686 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 76, 89 |
| Conread position: | 91-381 |
| Cow position: | chr15:11995988-11995706 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 91-416 |
| Cow position: | chr15:1297778-1298090 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 91-473 |
| Cow position: | chr15:42142898-42143261 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 72 |
| Conread position: | 92-294 |
| Cow position: | chr15:10512232-10512034 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 87, 74 |
| Conread position: | 92-295 |
| Cow position: | chr15:12870824-12870626 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 92-312 |
| Cow position: | chr15:12655876-12655657 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 85, 61 |
| Conread position: | 92-313 |
| Cow position: | chr15:4295803-4296020 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 92-315 |
| Cow position: | chr15:11560475-11560257 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 115, 82 |
| Conread position: | 92-345 |
| Cow position: | chr15:18671416-18671157 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 86 |
| Conread position: | 92-365 |
| Cow position: | chr15:1804295-1804028 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 160, 61 |
| Conread position: | 92-400 |
| Cow position: | chr15:31857631-31857930 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 92-473 |
| Cow position: | chr15:21608680-21608320 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 92-473 |
| Cow position: | chr15:52482788-52482418 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 72 |
| Conread position: | 92-473 |
| Cow position: | chr15:53164061-53164430 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 92-500 |
| Cow position: | chr15:41000030-40999614 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 94-401 |
| Cow position: | chr15:10245955-10245670 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 95-345 |
| Cow position: | chr15:21821881-21821636 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 221, 71 |
| Conread position: | 95-347 |
| Cow position: | chr15:16667460-16667213 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 69, 123 |
| Conread position: | 95-415 |
| Cow position: | chr15:21941803-21941496 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 216, 113 |
| Conread position: | 95-473 |
| Cow position: | chr15:1301179-1301551 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 95-473 |
| Cow position: | chr15:6227139-6226786 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 316, 78 |
| Conread position: | 95-473 |
| Cow position: | chr15:24797767-24797390 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 68 |
| Conread position: | 96-416 |
| Cow position: | chr15:51427782-51427469 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 59, 83 |
| Conread position: | 96-417 |
| Cow position: | chr15:1083332-1083025 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 96-469 |
| Cow position: | chr15:53353504-53353148 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 56, 67 |
| Conread position: | 98-469 |
| Cow position: | chr15:7962123-7962495 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 66, 86 |
| Conread position: | 100-384 |
| Cow position: | chr15:14856419-14856155 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 100-416 |
| Cow position: | chr15:41620143-41619832 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 67 |
| Conread position: | 101-417 |
| Cow position: | chr15:33303372-33303688 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 65, 245 |
| Conread position: | 102-393 |
| Cow position: | chr15:41225513-41225232 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 106-473 |
| Cow position: | chr15:236789-237139 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 80 |
| Conread position: | 107-473 |
| Cow position: | chr15:45361-45009 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 113-386 |
| Cow position: | chr15:47105102-47105361 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 115-321 |
| Cow position: | chr15:12441762-12441561 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 62 |
| Conread position: | 115-339 |
| Cow position: | chr15:32324145-32323927 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 115-347 |
| Cow position: | chr15:36773635-36773408 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 103, 51 |
| Conread position: | 115-409 |
| Cow position: | chr15:22136746-22137030 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 115-469 |
| Cow position: | chr15:46610995-46611325 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 115-473 |
| Cow position: | chr15:26912013-26911670 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 130-368 |
| Cow position: | chr15:10845797-10846028 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 130-473 |
| Cow position: | chr15:32204821-32204496 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 142-452 |
| Cow position: | chr15:36621499-36621809 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 150 |
| Conread position: | 178-386 |
| Cow position: | chr15:38394542-38394744 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 178-473 |
| Cow position: | chr15:33314325-33314036 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 179-326 |
| Cow position: | chr15:18322807-18322661 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 186-446 |
| Cow position: | chr15:24128782-24129031 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 187-473 |
| Cow position: | chr15:6082511-6082232 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 190-419 |
| Cow position: | chr15:33525553-33525785 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 190-482 |
| Cow position: | chr15:4676873-4676586 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 195-367 |
| Cow position: | chr15:6168380-6168210 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 197-417 |
| Cow position: | chr15:9062454-9062239 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 206-473 |
| Cow position: | chr15:28924614-28924358 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 217-394 |
| Cow position: | chr15:4501139-4501312 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 226-473 |
| Cow position: | chr15:18605561-18605792 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 228-362 |
| Cow position: | chr15:39832294-39832161 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 247-473 |
| Cow position: | chr15:27123364-27123139 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
Show alignments to all cow chromosomes.