Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 19-376 |
| Cow position: | chr17:8836790-8837133 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 73-469 |
| Cow position: | chr17:923986-923603 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 15 |
| Conread position: | 87-346 |
| Cow position: | chr17:17682809-17683053 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 89-275 |
| Cow position: | chr17:27202953-27203132 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 89-301 |
| Cow position: | chr17:23798374-23798168 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 89-305 |
| Cow position: | chr17:31856766-31856545 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 89-312 |
| Cow position: | chr17:20884616-20884398 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-325 |
| Cow position: | chr17:26233737-26233964 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 89-338 |
| Cow position: | chr17:6329208-6328961 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-345 |
| Cow position: | chr17:14762029-14762273 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 89-347 |
| Cow position: | chr17:7142954-7142708 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 89-358 |
| Cow position: | chr17:27058464-27058720 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-402 |
| Cow position: | chr17:20932424-20932126 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 88 |
| Conread position: | 89-406 |
| Cow position: | chr17:25097548-25097249 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 89-410 |
| Cow position: | chr17:21738781-21739102 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 78 |
| Conread position: | 89-416 |
| Cow position: | chr17:17410386-17410074 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 89-465 |
| Cow position: | chr17:11277935-11278295 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 170 |
| Conread position: | 89-469 |
| Cow position: | chr17:21335599-21335974 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 101 |
| Conread position: | 89-469 |
| Cow position: | chr17:32027359-32027739 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 78 |
| Conread position: | 89-473 |
| Cow position: | chr17:11618677-11618299 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 89-473 |
| Cow position: | chr17:12289316-12289700 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 157 |
| Conread position: | 89-473 |
| Cow position: | chr17:14248917-14249314 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 89-473 |
| Cow position: | chr17:15664770-15664388 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 232 |
| Conread position: | 89-473 |
| Cow position: | chr17:17222433-17222064 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 89-473 |
| Cow position: | chr17:21959595-21959959 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 89-473 |
| Cow position: | chr17:23063812-23063433 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 89-473 |
| Cow position: | chr17:34079018-34079379 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 61 |
| Conread position: | 89-473 |
| Cow position: | chr17:40288907-40289281 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 84 |
| Conread position: | 89-484 |
| Cow position: | chr17:18860628-18861010 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 87 |
| Conread position: | 92-302 |
| Cow position: | chr17:24559380-24559178 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 92-318 |
| Cow position: | chr17:1113978-1113754 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 162, 73 |
| Conread position: | 92-410 |
| Cow position: | chr17:20870008-20870311 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 89 |
| Conread position: | 92-469 |
| Cow position: | chr17:16446346-16446706 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 71 |
| Conread position: | 92-473 |
| Cow position: | chr17:30665362-30664998 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 93-473 |
| Cow position: | chr17:22564282-22563915 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 176 |
| Conread position: | 94-414 |
| Cow position: | chr17:7132352-7132677 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 178 |
| Conread position: | 95-304 |
| Cow position: | chr17:20874483-20874273 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 95-342 |
| Cow position: | chr17:12946262-12946516 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 126 |
| Conread position: | 95-345 |
| Cow position: | chr17:25916982-25916738 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 102, 78 |
| Conread position: | 95-369 |
| Cow position: | chr17:24149271-24149000 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 66 |
| Conread position: | 95-454 |
| Cow position: | chr17:11296736-11296376 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 176 |
| Conread position: | 95-469 |
| Cow position: | chr17:21973043-21973408 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 170 |
| Conread position: | 101-435 |
| Cow position: | chr17:11101722-11102037 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 101-473 |
| Cow position: | chr17:27679152-27679525 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 106-291 |
| Cow position: | chr17:17266815-17266998 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 107-473 |
| Cow position: | chr17:21292967-21293326 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 87 |
| Conread position: | 112-312 |
| Cow position: | chr17:32349141-32348949 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 112-343 |
| Cow position: | chr17:267515-267736 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 154, 64 |
| Conread position: | 112-387 |
| Cow position: | chr17:43323695-43323952 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 112-396 |
| Cow position: | chr17:44232642-44232924 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 251, 150 |
| Conread position: | 112-415 |
| Cow position: | chr17:41289952-41290240 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 112-416 |
| Cow position: | chr17:28540100-28539812 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 271, 54 |
| Conread position: | 113-484 |
| Cow position: | chr17:45881974-45881614 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 115-473 |
| Cow position: | chr17:1081060-1080723 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 147, 51 |
| Conread position: | 115-473 |
| Cow position: | chr17:5898465-5898808 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 176, 51 |
| Conread position: | 115-500 |
| Cow position: | chr17:1783537-1783914 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 127-402 |
| Cow position: | chr17:966692-966949 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 158-417 |
| Cow position: | chr17:5745227-5745468 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 165-424 |
| Cow position: | chr17:27162667-27162419 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 257, 30 |
| Conread position: | 176-473 |
| Cow position: | chr17:3843488-3843211 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 178-473 |
| Cow position: | chr17:6156047-6155760 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 178-473 |
| Cow position: | chr17:30539246-30539530 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 82 |
| Conread position: | 179-473 |
| Cow position: | chr17:32651625-32651335 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 136 |
| Conread position: | 187-349 |
| Cow position: | chr17:31701440-31701279 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 190-468 |
| Cow position: | chr17:37163526-37163805 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 157 |
| Conread position: | 217-322 |
| Cow position: | chr17:40673355-40673251 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 217-473 |
| Cow position: | chr17:20083546-20083793 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 248-464 |
| Cow position: | chr17:5740491-5740294 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 249-347 |
| Cow position: | chr17:26797871-26797969 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.