Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 86-328 |
| Cow position: | chr18:32430566-32430795 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 88-447 |
| Cow position: | chr18:52637509-52637862 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 86 |
| Conread position: | 89-264 |
| Cow position: | chr18:5632287-5632112 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 89-285 |
| Cow position: | chr18:50974275-50974467 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-309 |
| Cow position: | chr18:27109273-27109492 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 89-350 |
| Cow position: | chr18:1954570-1954828 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 89-370 |
| Cow position: | chr18:4495867-4496139 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-381 |
| Cow position: | chr18:51643346-51643662 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 89 |
| Conread position: | 89-383 |
| Cow position: | chr18:10322825-10322536 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 89-403 |
| Cow position: | chr18:47525427-47525122 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 134 |
| Conread position: | 89-413 |
| Cow position: | chr18:21266525-21266214 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 89-429 |
| Cow position: | chr18:26355009-26355332 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 168, 85 |
| Conread position: | 89-464 |
| Cow position: | chr18:4182168-4182532 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 89-469 |
| Cow position: | chr18:40759226-40758866 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 89-472 |
| Cow position: | chr18:11867356-11867000 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 77 |
| Conread position: | 89-473 |
| Cow position: | chr18:3180430-3180066 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 75 |
| Conread position: | 89-473 |
| Cow position: | chr18:7965251-7964877 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 98 |
| Conread position: | 89-473 |
| Cow position: | chr18:14586451-14586830 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 77 |
| Conread position: | 89-473 |
| Cow position: | chr18:17005279-17004900 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 88 |
| Conread position: | 89-473 |
| Cow position: | chr18:19646194-19645824 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 89-473 |
| Cow position: | chr18:20174110-20174484 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 83 |
| Conread position: | 89-473 |
| Cow position: | chr18:22120866-22121234 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-473 |
| Cow position: | chr18:28768385-28768013 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 106 |
| Conread position: | 89-473 |
| Cow position: | chr18:29371886-29371513 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 89 |
| Conread position: | 89-473 |
| Cow position: | chr18:39662798-39662423 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 129, 77 |
| Conread position: | 89-473 |
| Cow position: | chr18:43283737-43284105 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 89-474 |
| Cow position: | chr18:37023531-37023911 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 90-473 |
| Cow position: | chr18:11377383-11377017 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 86 |
| Conread position: | 91-258 |
| Cow position: | chr18:22274820-22274983 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 92-301 |
| Cow position: | chr18:346482-346689 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 92-306 |
| Cow position: | chr18:36746243-36746447 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 137, 74 |
| Conread position: | 92-315 |
| Cow position: | chr18:7109146-7108924 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 205, 74 |
| Conread position: | 92-328 |
| Cow position: | chr18:3211894-3211658 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 72, 175 |
| Conread position: | 92-414 |
| Cow position: | chr18:6609842-6610153 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 296, 72 |
| Conread position: | 92-468 |
| Cow position: | chr18:56159478-56159110 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 74 |
| Conread position: | 92-471 |
| Cow position: | chr18:31672496-31672855 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 58 |
| Conread position: | 92-473 |
| Cow position: | chr18:4927085-4926720 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 94-332 |
| Cow position: | chr18:54056564-54056344 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 95-292 |
| Cow position: | chr18:43555511-43555703 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 95-341 |
| Cow position: | chr18:2863977-2864222 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 69, 224 |
| Conread position: | 95-371 |
| Cow position: | chr18:17649725-17649988 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 95-401 |
| Cow position: | chr18:51656029-51656335 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 164, 71 |
| Conread position: | 95-407 |
| Cow position: | chr18:36098225-36097913 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 173 |
| Conread position: | 95-469 |
| Cow position: | chr18:51691449-51691818 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 80 |
| Conread position: | 96-473 |
| Cow position: | chr18:52635058-52635435 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 230 |
| Conread position: | 99-421 |
| Cow position: | chr18:16726658-16726345 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 100-385 |
| Cow position: | chr18:2480664-2480376 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 156, 63 |
| Conread position: | 107-411 |
| Cow position: | chr18:20271018-20271312 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 112-363 |
| Cow position: | chr18:12809851-12809615 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 112-366 |
| Cow position: | chr18:20481886-20482121 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 112-473 |
| Cow position: | chr18:7487246-7486898 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 61 |
| Conread position: | 112-473 |
| Cow position: | chr18:35636350-35636701 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 114-469 |
| Cow position: | chr18:10861435-10861766 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 142, 52 |
| Conread position: | 115-473 |
| Cow position: | chr18:39001810-39002149 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 51 |
| Conread position: | 117-415 |
| Cow position: | chr18:1144192-1144489 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 87 |
| Conread position: | 119-416 |
| Cow position: | chr18:52632418-52632702 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 190, 58 |
| Conread position: | 142-469 |
| Cow position: | chr18:26937687-26937377 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 267, 24 |
| Conread position: | 143-347 |
| Cow position: | chr18:55715882-55716077 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 144-444 |
| Cow position: | chr18:52382668-52382372 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 22, 151 |
| Conread position: | 178-469 |
| Cow position: | chr18:20864922-20864637 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 195-388 |
| Cow position: | chr18:21773413-21773220 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 213-478 |
| Cow position: | chr18:21721379-21721639 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 226-431 |
| Cow position: | chr18:4625787-4625589 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 243-473 |
| Cow position: | chr18:7966130-7965917 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 247-469 |
| Cow position: | chr18:6877753-6877979 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 111 |
| Conread position: | 247-473 |
| Cow position: | chr18:46108509-46108732 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.