Cow genome map


           Conread name:
           Thy1-THY010121F06
        

               Conread position:
               83-411
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 69
               

               Conread position:
               85-341
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               106, 89
               

               Conread position:
               88-312
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               76, 145
               

               Conread position:
               88-345
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               88-472
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               88-473
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 18
               

               Conread position:
               89-258
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               89-292
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               77, 89
               

               Conread position:
               89-321
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               97, 213
               

               Conread position:
               89-325
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               165, 76
               

               Conread position:
               89-345
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               52, 86
               

               Conread position:
               89-347
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               77, 141
               

               Conread position:
               89-347
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               175, 23
               

               Conread position:
               89-347
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               89-405
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 98
               

               Conread position:
               89-417
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 77
               

               Conread position:
               89-434
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               89-463
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               259
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               90, 75
               

               Conread position:
               89-469
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 38
               

               Conread position:
               89-469
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 17
               

               Conread position:
               89-469
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               262
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               104, 84
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 74
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 94
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               89-473
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 137
               

               Conread position:
               89-482
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               270
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               61, 222
               

               Conread position:
               89-482
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               274
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               40, 177
               

               Conread position:
               91-302
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               91-473
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               275
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               325, 38
               

               Conread position:
               92-294
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               71, 169
               

               Conread position:
               92-298
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               92-302
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               92-310
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               92-347
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               64, 48
               

               Conread position:
               92-361
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               74, 87
               

               Conread position:
               92-393
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               205, 216
               

               Conread position:
               92-400
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               294, 73
               

               Conread position:
               92-417
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 127
               

               Conread position:
               92-445
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               335, 65
               

               Conread position:
               92-473
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               262
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               36, 49
               

               Conread position:
               95-309
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               69, 172
               

               Conread position:
               95-347
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               69, 124
               

               Conread position:
               95-410
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               95-428
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               69, 83
               

               Conread position:
               95-469
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 66
               

               Conread position:
               95-473
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 170
               

               Conread position:
               95-478
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               98-411
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               222
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               65, 148
               

               Conread position:
               98-473
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 67
               

               Conread position:
               101-312
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               103-445
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               9, 250
               

               Conread position:
               104-453
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               247
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               106-473
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               131, 60
               

               Conread position:
               111-324
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               111-473
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 64
               

               Conread position:
               112-299
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               54, 149
               

               Conread position:
               115-321
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               41, 27
               

               Conread position:
               115-398
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               275, 49
               

               Conread position:
               115-473
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 50
               

               Conread position:
               116-321
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               48, 67
               

               Conread position:
               117-392
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               199
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               117-392
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               199
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               117-432
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               140-435
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 39
               

               Conread position:
               163-399
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               177-473
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               234, 83
               

               Conread position:
               178-315
               

               Cow position:
               
               

               Alignm length:
               140
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               178-386
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               178-473
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 8
               

               Conread position:
               186-367
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               186-469
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               190-473
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               199-473
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               227-416
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               55, 0
               
Show alignments to all cow chromosomes.