Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 83-411 |
| Cow position: | chr19:53371849-53372166 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 85-341 |
| Cow position: | chr19:33116642-33116391 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 106, 89 |
| Conread position: | 88-312 |
| Cow position: | chr19:25526326-25526108 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 76, 145 |
| Conread position: | 88-345 |
| Cow position: | chr19:11424273-11424515 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 88-472 |
| Cow position: | chr19:31595343-31594967 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 88-473 |
| Cow position: | chr19:23005315-23005698 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 89-258 |
| Cow position: | chr19:2221034-2221204 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-292 |
| Cow position: | chr19:9408728-9408527 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 77, 89 |
| Conread position: | 89-321 |
| Cow position: | chr19:53900099-53900332 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 97, 213 |
| Conread position: | 89-325 |
| Cow position: | chr19:6849154-6849390 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 165, 76 |
| Conread position: | 89-345 |
| Cow position: | chr19:32506076-32506316 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 86 |
| Conread position: | 89-347 |
| Cow position: | chr19:22039815-22039563 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 141 |
| Conread position: | 89-347 |
| Cow position: | chr19:34166408-34166156 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 175, 23 |
| Conread position: | 89-347 |
| Cow position: | chr19:36097262-36097013 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-405 |
| Cow position: | chr19:33469062-33468759 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 98 |
| Conread position: | 89-417 |
| Cow position: | chr19:36845291-36844972 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 89-434 |
| Cow position: | chr19:47118459-47118790 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 89-463 |
| Cow position: | chr19:34619987-34620357 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 90, 75 |
| Conread position: | 89-469 |
| Cow position: | chr19:12698360-12697998 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 89-469 |
| Cow position: | chr19:51400973-51401339 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 89-469 |
| Cow position: | chr19:54943010-54942648 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 104, 84 |
| Conread position: | 89-473 |
| Cow position: | chr19:268395-268018 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 74 |
| Conread position: | 89-473 |
| Cow position: | chr19:23403603-23403983 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 94 |
| Conread position: | 89-473 |
| Cow position: | chr19:28014520-28014148 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 89-473 |
| Cow position: | chr19:33747891-33747520 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 137 |
| Conread position: | 89-482 |
| Cow position: | chr19:25053623-25054013 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 61, 222 |
| Conread position: | 89-482 |
| Cow position: | chr19:31874162-31873765 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 40, 177 |
| Conread position: | 91-302 |
| Cow position: | chr19:22449887-22450104 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 91-473 |
| Cow position: | chr19:42205965-42205598 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 325, 38 |
| Conread position: | 92-294 |
| Cow position: | chr19:46094598-46094798 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 71, 169 |
| Conread position: | 92-298 |
| Cow position: | chr19:4800780-4800580 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 92-302 |
| Cow position: | chr19:47859277-47859482 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 92-310 |
| Cow position: | chr19:55394939-55394731 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 92-347 |
| Cow position: | chr19:8270562-8270815 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 92-361 |
| Cow position: | chr19:7158682-7158954 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 74, 87 |
| Conread position: | 92-393 |
| Cow position: | chr19:32754565-32754262 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 205, 216 |
| Conread position: | 92-400 |
| Cow position: | chr19:51185462-51185166 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 294, 73 |
| Conread position: | 92-417 |
| Cow position: | chr19:10081113-10080792 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 92-445 |
| Cow position: | chr19:18750037-18750386 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 65 |
| Conread position: | 92-473 |
| Cow position: | chr19:36722350-36722002 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 95-309 |
| Cow position: | chr19:11443024-11442807 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 172 |
| Conread position: | 95-347 |
| Cow position: | chr19:42564180-42563924 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 69, 124 |
| Conread position: | 95-410 |
| Cow position: | chr19:30886431-30886124 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 95-428 |
| Cow position: | chr19:20622689-20622374 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 69, 83 |
| Conread position: | 95-469 |
| Cow position: | chr19:39661506-39661871 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 95-473 |
| Cow position: | chr19:7543449-7543089 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 170 |
| Conread position: | 95-478 |
| Cow position: | chr19:14253667-14253297 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 98-411 |
| Cow position: | chr19:42695028-42694717 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 65, 148 |
| Conread position: | 98-473 |
| Cow position: | chr19:35540327-35539972 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 67 |
| Conread position: | 101-312 |
| Cow position: | chr19:7884609-7884406 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 103-445 |
| Cow position: | chr19:10964563-10964903 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 9, 250 |
| Conread position: | 104-453 |
| Cow position: | chr19:6417619-6417287 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 106-473 |
| Cow position: | chr19:3819492-3819852 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 131, 60 |
| Conread position: | 111-324 |
| Cow position: | chr19:23463917-23464124 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 111-473 |
| Cow position: | chr19:8496277-8496633 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 112-299 |
| Cow position: | chr19:21816985-21816798 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 149 |
| Conread position: | 115-321 |
| Cow position: | chr19:10173097-10173303 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 115-398 |
| Cow position: | chr19:53243460-53243731 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 275, 49 |
| Conread position: | 115-473 |
| Cow position: | chr19:15863032-15863376 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 50 |
| Conread position: | 116-321 |
| Cow position: | chr19:38111484-38111286 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 117-392 |
| Cow position: | chr19:25851819-25852084 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 117-392 |
| Cow position: | chr19:25864911-25865176 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 117-432 |
| Cow position: | chr19:25851475-25851780 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 140-435 |
| Cow position: | chr19:4251980-4252267 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 163-399 |
| Cow position: | chr19:44125613-44125390 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 177-473 |
| Cow position: | chr19:48409466-48409183 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 234, 83 |
| Conread position: | 178-315 |
| Cow position: | chr19:9395207-9395068 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 178-386 |
| Cow position: | chr19:11534637-11534443 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 178-473 |
| Cow position: | chr19:31378647-31378948 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 8 |
| Conread position: | 186-367 |
| Cow position: | chr19:18646545-18646716 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 186-469 |
| Cow position: | chr19:27348326-27348590 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 190-473 |
| Cow position: | chr19:51267837-51267573 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 199-473 |
| Cow position: | chr19:21379993-21380251 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 227-416 |
| Cow position: | chr19:35142109-35142289 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.