Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 88-358 |
| Cow position: | chr20:13652271-13652521 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 88-406 |
| Cow position: | chr20:14879885-14879574 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 303, 170 |
| Conread position: | 88-473 |
| Cow position: | chr20:4945156-4945524 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 10 |
| Conread position: | 88-473 |
| Cow position: | chr20:12995909-12996288 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 172 |
| Conread position: | 89-256 |
| Cow position: | chr20:23506375-23506539 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 89-292 |
| Cow position: | chr20:24711936-24711732 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 89-302 |
| Cow position: | chr20:24000702-24000911 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 89-340 |
| Cow position: | chr20:4334435-4334667 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-370 |
| Cow position: | chr20:3141669-3141407 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 89-388 |
| Cow position: | chr20:21929000-21928711 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 89-415 |
| Cow position: | chr20:11482039-11482360 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-417 |
| Cow position: | chr20:14759570-14759887 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 75 |
| Conread position: | 89-417 |
| Cow position: | chr20:18551457-18551140 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 89-418 |
| Cow position: | chr20:6890809-6890481 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 226, 77 |
| Conread position: | 89-454 |
| Cow position: | chr20:39417808-39418152 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 121, 40 |
| Conread position: | 89-473 |
| Cow position: | chr20:3599305-3599671 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 17 |
| Conread position: | 89-473 |
| Cow position: | chr20:6054414-6054784 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 228 |
| Conread position: | 89-473 |
| Cow position: | chr20:8429842-8429469 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 63 |
| Conread position: | 89-473 |
| Cow position: | chr20:9433682-9433323 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-473 |
| Cow position: | chr20:10884262-10884645 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 101 |
| Conread position: | 89-473 |
| Cow position: | chr20:20967416-20967078 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 89-473 |
| Cow position: | chr20:35146116-35145728 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 74 |
| Conread position: | 89-473 |
| Cow position: | chr20:35797704-35797327 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 17 |
| Conread position: | 89-473 |
| Cow position: | chr20:36779634-36780009 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 89-473 |
| Cow position: | chr20:39415845-39415476 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 60, 174 |
| Conread position: | 91-309 |
| Cow position: | chr20:30992235-30992019 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 92-321 |
| Cow position: | chr20:4332222-4332005 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 165, 81 |
| Conread position: | 92-330 |
| Cow position: | chr20:32523556-32523328 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 92-397 |
| Cow position: | chr20:15565735-15566034 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 92-416 |
| Cow position: | chr20:1139675-1139995 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 173 |
| Conread position: | 92-472 |
| Cow position: | chr20:34001297-34001670 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 173 |
| Conread position: | 92-473 |
| Cow position: | chr20:9014255-9014627 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 92-473 |
| Cow position: | chr20:22959255-22959622 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 54 |
| Conread position: | 92-473 |
| Cow position: | chr20:29845143-29844766 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 86 |
| Conread position: | 94-378 |
| Cow position: | chr20:14980419-14980698 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 70, 85 |
| Conread position: | 95-343 |
| Cow position: | chr20:36010885-36010639 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 95-412 |
| Cow position: | chr20:34777269-34776968 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 91, 70 |
| Conread position: | 95-417 |
| Cow position: | chr20:14735758-14735454 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 95-425 |
| Cow position: | chr20:35176688-35177004 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 224, 108 |
| Conread position: | 95-427 |
| Cow position: | chr20:3331196-3331527 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 95-464 |
| Cow position: | chr20:35958737-35958379 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 95-473 |
| Cow position: | chr20:40782050-40781698 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 95-474 |
| Cow position: | chr20:580831-581208 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 115 |
| Conread position: | 97-454 |
| Cow position: | chr20:13967169-13967519 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 88 |
| Conread position: | 99-347 |
| Cow position: | chr20:282840-283083 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 99-378 |
| Cow position: | chr20:11864048-11864320 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 101-420 |
| Cow position: | chr20:30778252-30777950 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 102-416 |
| Cow position: | chr20:22704377-22704066 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 156 |
| Conread position: | 106-401 |
| Cow position: | chr20:38551450-38551167 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 112-417 |
| Cow position: | chr20:7442060-7442347 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 260, 55 |
| Conread position: | 112-473 |
| Cow position: | chr20:9537211-9536858 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 114-378 |
| Cow position: | chr20:34365096-34364851 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 115-339 |
| Cow position: | chr20:39247982-39247763 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 115-473 |
| Cow position: | chr20:13876633-13876988 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 115-473 |
| Cow position: | chr20:33435095-33435441 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 145 |
| Conread position: | 140-340 |
| Cow position: | chr20:41089748-41089941 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 152-453 |
| Cow position: | chr20:15582005-15582294 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 178-417 |
| Cow position: | chr20:22007508-22007281 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 186-473 |
| Cow position: | chr20:6501805-6501520 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 247-420 |
| Cow position: | chr20:12784139-12783971 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.