Cow genome map

Conread name: Thy1-THY010121F06

Conread position: 45-304
Cow position: chr21:8527324-8527571 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 88-309
Cow position: chr21:26245031-26244824 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 88-416
Cow position: chr21:27521221-27521526 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 6, 54

Conread position: 88-446
Cow position: chr21:41878588-41878245 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 246
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 85, 0

Conread position: 88-463
Cow position: chr21:40786796-40786422 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 73

Conread position: 88-473
Cow position: chr21:19766971-19766596 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 85

Conread position: 88-473
Cow position: chr21:44671861-44671495 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 89-258
Cow position: chr21:28919407-28919575 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 89-307
Cow position: chr21:17009097-17008884 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 89-328
Cow position: chr21:46551987-46552214 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 104, 111

Conread position: 89-331
Cow position: chr21:25628794-25629029 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 87, 0

Conread position: 89-341
Cow position: chr21:20153072-20152820 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 75, 88

Conread position: 89-345
Cow position: chr21:10538139-10538394 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 161, 84

Conread position: 89-347
Cow position: chr21:29978644-29978896 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 74, 86

Conread position: 89-371
Cow position: chr21:13840443-13840166 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 75, 86

Conread position: 89-386
Cow position: chr21:22193983-22194282 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 32, 49

Conread position: 89-388
Cow position: chr21:32339624-32339910 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 71, 0

Conread position: 89-388
Cow position: chr21:32455020-32454728 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 44

Conread position: 89-398
Cow position: chr21:46144075-46143760 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 181, 77

Conread position: 89-402
Cow position: chr21:37706299-37706594 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 75, 107

Conread position: 89-404
Cow position: chr21:14452350-14452041 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 231
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 263, 77

Conread position: 89-406
Cow position: chr21:3763626-3763928 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 230, 74

Conread position: 89-409
Cow position: chr21:42841481-42841785 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 213
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 75, 156

Conread position: 89-417
Cow position: chr21:41579872-41579549 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 91, 116

Conread position: 89-464
Cow position: chr21:23321962-23322330 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 74

Conread position: 89-468
Cow position: chr21:9416367-9415989 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 169

Conread position: 89-468
Cow position: chr21:18289779-18289410 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 76

Conread position: 89-469
Cow position: chr21:4281759-4282118 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 71

Conread position: 89-469
Cow position: chr21:18568523-18568903 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 74

Conread position: 89-471
Cow position: chr21:6834165-6833796 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 89-472
Cow position: chr21:30231578-30231957 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 89

Conread position: 89-472
Cow position: chr21:30606971-30607360 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 85

Conread position: 89-473
Cow position: chr21:5153737-5153359 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 93

Conread position: 89-473
Cow position: chr21:10727393-10727023 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 89-473
Cow position: chr21:13034922-13035307 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 150

Conread position: 89-473
Cow position: chr21:13048077-13048454 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 98

Conread position: 89-473
Cow position: chr21:15584303-15584657 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 89-473
Cow position: chr21:20160792-20160426 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 89-473
Cow position: chr21:25127720-25127352 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 98

Conread position: 91-308
Cow position: chr21:8206886-8206674 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 85, 73

Conread position: 92-329
Cow position: chr21:18155453-18155689 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 74, 0

Conread position: 92-347
Cow position: chr21:12461854-12462104 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 73, 169

Conread position: 92-347
Cow position: chr21:17875080-17875329 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 68, 0

Conread position: 92-369
Cow position: chr21:24642633-24642364 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 14, 0

Conread position: 92-416
Cow position: chr21:41621238-41620918 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 74

Conread position: 92-417
Cow position: chr21:34739957-34739647 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 136, 0

Conread position: 92-473
Cow position: chr21:7564194-7564580 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 198

Conread position: 92-474
Cow position: chr21:20044651-20045026 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 126

Conread position: 95-291
Cow position: chr21:30256159-30256350 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 95-344
Cow position: chr21:34151695-34151450 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 15

Conread position: 95-385
Cow position: chr21:19936810-19937103 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 207
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 166

Conread position: 95-406
Cow position: chr21:10118669-10118362 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 213
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 68, 50

Conread position: 95-414
Cow position: chr21:23586992-23586677 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 89

Conread position: 95-416
Cow position: chr21:3818319-3818015 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 135, 79

Conread position: 95-426
Cow position: chr21:45473648-45473969 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 157, 71

Conread position: 95-428
Cow position: chr21:6624267-6623928 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 235
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 236, 72

Conread position: 95-446
Cow position: chr21:27124011-27124359 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 157

Conread position: 95-473
Cow position: chr21:27863403-27863777 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 110

Conread position: 95-482
Cow position: chr21:24222427-24222808 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 71

Conread position: 96-284
Cow position: chr21:40432554-40432375 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 96-328
Cow position: chr21:6017734-6017498 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 158
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 54, 95

Conread position: 96-332
Cow position: chr21:23980073-23980305 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 223, 70

Conread position: 97-383
Cow position: chr21:10001182-10000912 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 68, 13

Conread position: 97-473
Cow position: chr21:3585260-3585614 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 100-383
Cow position: chr21:45439131-45439419 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 42

Conread position: 100-404
Cow position: chr21:47764012-47764301 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 217, 64

Conread position: 112-387
Cow position: chr21:28989703-28989443 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 96, 0

Conread position: 112-473
Cow position: chr21:39888656-39889002 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 115-281
Cow position: chr21:1511383-1511220 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 80, 61

Conread position: 115-392
Cow position: chr21:18790472-18790733 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 115-473
Cow position: chr21:6764610-6764960 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 63

Conread position: 115-473
Cow position: chr21:33563098-33562756 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 51

Conread position: 119-473
Cow position: chr21:13898274-13897935 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 247
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 45, 146

Conread position: 125-473
Cow position: chr21:28617671-28617344 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 237
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 135, 0

Conread position: 156-435
Cow position: chr21:28626291-28626021 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 104, 0

Conread position: 160-389
Cow position: chr21:10608406-10608630 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 210, 23

Conread position: 178-473
Cow position: chr21:11706716-11707008 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 0

Conread position: 179-393
Cow position: chr21:29979731-29979934 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 188-402
Cow position: chr21:9998698-9998908 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 212, 72

Conread position: 190-473
Cow position: chr21:12366399-12366129 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 195-406
Cow position: chr21:13850053-13850262 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 152, 0

Conread position: 195-452
Cow position: chr21:1483503-1483255 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 195-473
Cow position: chr21:4080371-4080096 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 200-402
Cow position: chr21:4268883-4268686 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 107, 0

Conread position: 228-473
Cow position: chr21:34254300-34254538 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 75, 0

Conread position: 230-473
Cow position: chr21:30626202-30626441 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 248-473
Cow position: chr21:5595624-5595406 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 0

Conread position: 249-473
Cow position: chr21:46777014-46777231 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 66, 0

Show alignments to all cow chromosomes.