Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 82-473 |
| Cow position: | chr22:14376356-14376716 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 82, 92 |
| Conread position: | 88-446 |
| Cow position: | chr22:11130922-11130573 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 170 |
| Conread position: | 88-452 |
| Cow position: | chr22:5290900-5290540 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 98 |
| Conread position: | 88-473 |
| Cow position: | chr22:47741470-47741091 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 130, 18 |
| Conread position: | 89-306 |
| Cow position: | chr22:3241654-3241859 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 89-312 |
| Cow position: | chr22:27740939-27740719 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 163, 39 |
| Conread position: | 89-318 |
| Cow position: | chr22:6096968-6097198 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 76, 109 |
| Conread position: | 89-371 |
| Cow position: | chr22:27825889-27825613 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 89-386 |
| Cow position: | chr22:22223236-22222954 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-386 |
| Cow position: | chr22:25221849-25222140 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 21 |
| Conread position: | 89-398 |
| Cow position: | chr22:3965235-3964935 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 89-403 |
| Cow position: | chr22:8116039-8116337 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 129, 86 |
| Conread position: | 89-406 |
| Cow position: | chr22:28351610-28351914 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 243, 17 |
| Conread position: | 89-412 |
| Cow position: | chr22:534548-534229 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 77 |
| Conread position: | 89-412 |
| Cow position: | chr22:28058001-28058305 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 93 |
| Conread position: | 89-417 |
| Cow position: | chr22:4060898-4061208 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 89-417 |
| Cow position: | chr22:9372570-9372251 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 89-419 |
| Cow position: | chr22:28146725-28146413 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 77, 128 |
| Conread position: | 89-420 |
| Cow position: | chr22:29013929-29013607 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 89-429 |
| Cow position: | chr22:36560609-36560937 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 89-434 |
| Cow position: | chr22:21568046-21567717 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 89-435 |
| Cow position: | chr22:38930458-38930801 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 89-463 |
| Cow position: | chr22:30049517-30049887 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 89-468 |
| Cow position: | chr22:1484912-1484542 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 77 |
| Conread position: | 89-469 |
| Cow position: | chr22:1326468-1326100 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 89-469 |
| Cow position: | chr22:33448032-33448407 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 51 |
| Conread position: | 89-472 |
| Cow position: | chr22:16044367-16044753 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 176 |
| Conread position: | 89-473 |
| Cow position: | chr22:1265875-1266264 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 170 |
| Conread position: | 89-473 |
| Cow position: | chr22:1279336-1279711 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 91 |
| Conread position: | 89-473 |
| Cow position: | chr22:4990118-4990496 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 89-473 |
| Cow position: | chr22:6092605-6092967 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 60, 89 |
| Conread position: | 89-473 |
| Cow position: | chr22:6622198-6622570 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-473 |
| Cow position: | chr22:8733288-8733644 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 24, 88 |
| Conread position: | 89-473 |
| Cow position: | chr22:16273689-16273309 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 259 |
| Conread position: | 89-473 |
| Cow position: | chr22:16812115-16812488 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 98 |
| Conread position: | 89-473 |
| Cow position: | chr22:20626886-20626517 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-473 |
| Cow position: | chr22:23857095-23856723 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 78 |
| Conread position: | 89-473 |
| Cow position: | chr22:26134175-26134557 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 101 |
| Conread position: | 89-473 |
| Cow position: | chr22:30483964-30483594 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 227, 70 |
| Conread position: | 89-473 |
| Cow position: | chr22:34398407-34398780 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 89-489 |
| Cow position: | chr22:44180642-44180251 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 88 |
| Conread position: | 92-399 |
| Cow position: | chr22:4993864-4994172 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 92-407 |
| Cow position: | chr22:12968023-12968328 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 92-409 |
| Cow position: | chr22:37324590-37324286 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 92-417 |
| Cow position: | chr22:34750721-34750408 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 92-446 |
| Cow position: | chr22:16911748-16912088 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 119 |
| Conread position: | 92-469 |
| Cow position: | chr22:34712772-34712400 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 86 |
| Conread position: | 92-473 |
| Cow position: | chr22:12681754-12682120 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 95 |
| Conread position: | 92-473 |
| Cow position: | chr22:14091177-14091553 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 92 |
| Conread position: | 92-473 |
| Cow position: | chr22:20323602-20323981 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 118 |
| Conread position: | 94-427 |
| Cow position: | chr22:1975658-1975334 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 95-342 |
| Cow position: | chr22:1849117-1848869 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 215 |
| Conread position: | 95-402 |
| Cow position: | chr22:28665326-28665015 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 205, 69 |
| Conread position: | 95-469 |
| Cow position: | chr22:25943518-25943160 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 95-471 |
| Cow position: | chr22:34475957-34476323 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 71 |
| Conread position: | 95-473 |
| Cow position: | chr22:4075844-4076223 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 83 |
| Conread position: | 95-473 |
| Cow position: | chr22:23176398-23176784 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 69 |
| Conread position: | 95-473 |
| Cow position: | chr22:27328851-27329210 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 164, 45 |
| Conread position: | 96-416 |
| Cow position: | chr22:26339796-26339491 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 286, 69 |
| Conread position: | 97-385 |
| Cow position: | chr22:25629723-25630008 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 229, 66 |
| Conread position: | 98-473 |
| Cow position: | chr22:3960243-3960621 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 99-314 |
| Cow position: | chr22:22553201-22553405 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 100-346 |
| Cow position: | chr22:2524000-2523763 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 100-404 |
| Cow position: | chr22:36562981-36563280 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 272, 66 |
| Conread position: | 101-391 |
| Cow position: | chr22:2010839-2010556 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 101-416 |
| Cow position: | chr22:19047778-19048071 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 102-473 |
| Cow position: | chr22:15959731-15960100 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 58 |
| Conread position: | 104-280 |
| Cow position: | chr22:27681751-27681578 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 112-412 |
| Cow position: | chr22:37029578-37029866 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 52 |
| Conread position: | 112-473 |
| Cow position: | chr22:6122878-6123210 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 112-473 |
| Cow position: | chr22:39494171-39494529 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 114-473 |
| Cow position: | chr22:22022913-22022565 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 115-473 |
| Cow position: | chr22:36539640-36540000 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 130-439 |
| Cow position: | chr22:10363076-10362775 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 35 |
| Conread position: | 134-473 |
| Cow position: | chr22:28179862-28179519 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 169 |
| Conread position: | 155-347 |
| Cow position: | chr22:1081489-1081303 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 186-378 |
| Cow position: | chr22:22148032-22147840 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 55 |
| Conread position: | 186-473 |
| Cow position: | chr22:15919675-15919960 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 194-473 |
| Cow position: | chr22:11200982-11200721 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 196-473 |
| Cow position: | chr22:37817700-37817440 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 206-386 |
| Cow position: | chr22:37066856-37067036 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 147 |
| Conread position: | 213-406 |
| Cow position: | chr22:38313535-38313722 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 243-473 |
| Cow position: | chr22:2551281-2551070 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.