Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 61-312 |
| Cow position: | chr23:1636358-1636114 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 87-473 |
| Cow position: | chr23:9594779-9595149 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 88-321 |
| Cow position: | chr23:12334267-12334037 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 79 |
| Conread position: | 88-415 |
| Cow position: | chr23:8006299-8005979 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 91 |
| Conread position: | 88-417 |
| Cow position: | chr23:26794857-26795168 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 88-473 |
| Cow position: | chr23:37065905-37065521 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 177 |
| Conread position: | 89-284 |
| Cow position: | chr23:5436948-5437134 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 63 |
| Conread position: | 89-285 |
| Cow position: | chr23:3244859-3245059 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 89 |
| Conread position: | 89-315 |
| Cow position: | chr23:18415996-18416215 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-342 |
| Cow position: | chr23:33570189-33569945 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 108, 71 |
| Conread position: | 89-342 |
| Cow position: | chr23:34356697-34356443 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 52, 86 |
| Conread position: | 89-346 |
| Cow position: | chr23:38973902-38973652 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 99, 17 |
| Conread position: | 89-347 |
| Cow position: | chr23:40443915-40443670 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 75, 115 |
| Conread position: | 89-370 |
| Cow position: | chr23:20557790-20558076 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 94 |
| Conread position: | 89-385 |
| Cow position: | chr23:29521527-29521237 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 77, 87 |
| Conread position: | 89-388 |
| Cow position: | chr23:24704339-24704040 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 76, 167 |
| Conread position: | 89-401 |
| Cow position: | chr23:18402235-18402534 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 89-412 |
| Cow position: | chr23:4968469-4968778 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 89-418 |
| Cow position: | chr23:16582855-16583174 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 165, 87 |
| Conread position: | 89-445 |
| Cow position: | chr23:31601396-31601750 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 89-452 |
| Cow position: | chr23:31970483-31970819 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 93, 21 |
| Conread position: | 89-469 |
| Cow position: | chr23:1397984-1398350 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 84 |
| Conread position: | 89-473 |
| Cow position: | chr23:1254742-1254350 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 89 |
| Conread position: | 89-473 |
| Cow position: | chr23:4528822-4529212 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 177 |
| Conread position: | 89-473 |
| Cow position: | chr23:18697971-18698346 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 60 |
| Conread position: | 89-473 |
| Cow position: | chr23:18802215-18802593 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 85 |
| Conread position: | 89-473 |
| Cow position: | chr23:21336429-21336809 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 221 |
| Conread position: | 89-473 |
| Cow position: | chr23:34314899-34315288 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 225 |
| Conread position: | 91-469 |
| Cow position: | chr23:25864647-25864995 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 91-482 |
| Cow position: | chr23:1605281-1604898 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 92-296 |
| Cow position: | chr23:24984118-24984318 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 174, 18 |
| Conread position: | 92-301 |
| Cow position: | chr23:33153141-33153342 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 92-308 |
| Cow position: | chr23:33622098-33622312 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 130 |
| Conread position: | 92-346 |
| Cow position: | chr23:19371023-19371265 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 92-393 |
| Cow position: | chr23:1885121-1885416 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 92-398 |
| Cow position: | chr23:16699990-16700284 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 68 |
| Conread position: | 92-469 |
| Cow position: | chr23:28206649-28206299 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 92-473 |
| Cow position: | chr23:40502463-40502822 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 95-306 |
| Cow position: | chr23:1921178-1921385 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 95-314 |
| Cow position: | chr23:1767877-1767664 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 138, 69 |
| Conread position: | 95-403 |
| Cow position: | chr23:4562934-4562638 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 95-423 |
| Cow position: | chr23:187227-186901 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 71 |
| Conread position: | 95-469 |
| Cow position: | chr23:11129282-11128917 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 130 |
| Conread position: | 96-363 |
| Cow position: | chr23:1742405-1742147 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 97-304 |
| Cow position: | chr23:3191078-3191284 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 67, 81 |
| Conread position: | 106-473 |
| Cow position: | chr23:6720243-6720597 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 350, 154 |
| Conread position: | 107-315 |
| Cow position: | chr23:9713359-9713153 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 70, 59 |
| Conread position: | 107-341 |
| Cow position: | chr23:40844687-40844460 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 112-416 |
| Cow position: | chr23:13555406-13555691 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 115-347 |
| Cow position: | chr23:29786317-29786548 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 115-406 |
| Cow position: | chr23:38503077-38503379 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 115-469 |
| Cow position: | chr23:14164369-14164720 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 147 |
| Conread position: | 130-432 |
| Cow position: | chr23:33232892-33233184 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 150 |
| Conread position: | 168-473 |
| Cow position: | chr23:406195-406478 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 177-459 |
| Cow position: | chr23:3247553-3247285 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 178-432 |
| Cow position: | chr23:2316765-2316527 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 181-401 |
| Cow position: | chr23:36725948-36726162 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 138, 68 |
| Conread position: | 183-473 |
| Cow position: | chr23:7175581-7175303 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.