Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 86-346 |
| Cow position: | chr24:3664208-3663944 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 64, 150 |
| Conread position: | 88-438 |
| Cow position: | chr24:42344968-42345319 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 88-473 |
| Cow position: | chr24:27290900-27290534 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 88-473 |
| Cow position: | chr24:32054690-32054325 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 88 |
| Conread position: | 89-302 |
| Cow position: | chr24:10300104-10299903 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 34 |
| Conread position: | 89-303 |
| Cow position: | chr24:19000075-18999866 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 158, 77 |
| Conread position: | 89-304 |
| Cow position: | chr24:16895409-16895618 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 86 |
| Conread position: | 89-306 |
| Cow position: | chr24:19800875-19800662 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 89-332 |
| Cow position: | chr24:28253735-28253500 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 107 |
| Conread position: | 89-341 |
| Cow position: | chr24:15373433-15373194 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 186, 85 |
| Conread position: | 89-363 |
| Cow position: | chr24:18344091-18343812 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 223 |
| Conread position: | 89-409 |
| Cow position: | chr24:7914034-7913716 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 89-412 |
| Cow position: | chr24:30229501-30229181 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 145 |
| Conread position: | 89-417 |
| Cow position: | chr24:27096717-27096396 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 89-444 |
| Cow position: | chr24:19535228-19535562 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 353, 77 |
| Conread position: | 89-469 |
| Cow position: | chr24:11840215-11839838 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 74 |
| Conread position: | 89-469 |
| Cow position: | chr24:27874623-27874260 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 77 |
| Conread position: | 89-472 |
| Cow position: | chr24:41986023-41985621 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 89-473 |
| Cow position: | chr24:3493912-3493548 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-473 |
| Cow position: | chr24:18484966-18485346 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 154 |
| Conread position: | 89-473 |
| Cow position: | chr24:18741544-18741915 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 89-473 |
| Cow position: | chr24:20024641-20024261 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 75 |
| Conread position: | 89-473 |
| Cow position: | chr24:20225764-20225391 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 89-473 |
| Cow position: | chr24:23616724-23616349 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 72 |
| Conread position: | 89-473 |
| Cow position: | chr24:27906466-27906082 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 89-473 |
| Cow position: | chr24:29673550-29673173 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 95 |
| Conread position: | 89-473 |
| Cow position: | chr24:32693747-32693359 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 171 |
| Conread position: | 89-473 |
| Cow position: | chr24:33944429-33944047 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 325, 64 |
| Conread position: | 92-344 |
| Cow position: | chr24:33465593-33465819 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 92-347 |
| Cow position: | chr24:10841182-10841437 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 105, 81 |
| Conread position: | 92-358 |
| Cow position: | chr24:20249871-20250135 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 92-465 |
| Cow position: | chr24:29679288-29679650 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 14 |
| Conread position: | 92-472 |
| Cow position: | chr24:44040980-44041351 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 172 |
| Conread position: | 93-339 |
| Cow position: | chr24:10125898-10125648 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 94-469 |
| Cow position: | chr24:29170986-29170634 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 169, 69 |
| Conread position: | 95-308 |
| Cow position: | chr24:16645298-16645512 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 82, 198 |
| Conread position: | 95-338 |
| Cow position: | chr24:34008551-34008793 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 163 |
| Conread position: | 96-326 |
| Cow position: | chr24:352585-352809 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 96-473 |
| Cow position: | chr24:19465896-19466279 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 97-469 |
| Cow position: | chr24:30483928-30484276 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 80 |
| Conread position: | 98-388 |
| Cow position: | chr24:2970586-2970868 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 58 |
| Conread position: | 100-473 |
| Cow position: | chr24:814244-814608 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 124 |
| Conread position: | 107-469 |
| Cow position: | chr24:15473368-15473016 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 60 |
| Conread position: | 115-458 |
| Cow position: | chr24:18266160-18266503 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 115-473 |
| Cow position: | chr24:6160087-6160430 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 118-454 |
| Cow position: | chr24:34315355-34315032 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 119-469 |
| Cow position: | chr24:16625488-16625843 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 134-473 |
| Cow position: | chr24:29360013-29360324 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 177-473 |
| Cow position: | chr24:7301402-7301112 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 178-473 |
| Cow position: | chr24:6340953-6340671 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 178-473 |
| Cow position: | chr24:39440613-39440903 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 136 |
| Conread position: | 190-406 |
| Cow position: | chr24:6900756-6900545 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 196-473 |
| Cow position: | chr24:37246288-37246564 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 197-393 |
| Cow position: | chr24:25950744-25950933 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 93, 52 |
| Conread position: | 247-473 |
| Cow position: | chr24:32015001-32014778 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 137, 50 |
Show alignments to all cow chromosomes.