Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 88-469 |
| Cow position: | chr25:6463978-6464348 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 91 |
| Conread position: | 88-473 |
| Cow position: | chr25:18294263-18294639 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 77 |
| Conread position: | 89-308 |
| Cow position: | chr25:21893388-21893174 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 89-340 |
| Cow position: | chr25:17342508-17342257 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-387 |
| Cow position: | chr25:38425411-38425127 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 89-393 |
| Cow position: | chr25:18988440-18988132 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 184 |
| Conread position: | 89-399 |
| Cow position: | chr25:12293697-12294001 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 77, 92 |
| Conread position: | 89-406 |
| Cow position: | chr25:7581381-7581684 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 89-410 |
| Cow position: | chr25:17566637-17566326 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 77, 88 |
| Conread position: | 89-416 |
| Cow position: | chr25:28187895-28188215 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 89-445 |
| Cow position: | chr25:6474037-6474396 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 170 |
| Conread position: | 89-464 |
| Cow position: | chr25:16921747-16922107 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 89-471 |
| Cow position: | chr25:33663855-33664218 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 85 |
| Conread position: | 89-473 |
| Cow position: | chr25:17658661-17658291 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 85 |
| Conread position: | 89-473 |
| Cow position: | chr25:18564536-18564171 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 89-474 |
| Cow position: | chr25:26087569-26087191 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 92-264 |
| Cow position: | chr25:30816936-30816763 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 92-340 |
| Cow position: | chr25:26134089-26133846 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 89 |
| Conread position: | 92-347 |
| Cow position: | chr25:13272616-13272370 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 92-386 |
| Cow position: | chr25:21289393-21289103 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 92-412 |
| Cow position: | chr25:18487715-18487411 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 163, 67 |
| Conread position: | 92-417 |
| Cow position: | chr25:37594453-37594146 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 71, 86 |
| Conread position: | 92-439 |
| Cow position: | chr25:21894837-21895177 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 150 |
| Conread position: | 92-464 |
| Cow position: | chr25:16064939-16064584 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 92-469 |
| Cow position: | chr25:3145891-3145526 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 92-469 |
| Cow position: | chr25:9956991-9957354 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 65 |
| Conread position: | 92-473 |
| Cow position: | chr25:20402662-20403043 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 254 |
| Conread position: | 93-322 |
| Cow position: | chr25:9002718-9002497 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 95-337 |
| Cow position: | chr25:18905929-18905692 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 95-341 |
| Cow position: | chr25:13672439-13672195 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 69, 82 |
| Conread position: | 95-404 |
| Cow position: | chr25:11666692-11666401 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 95-417 |
| Cow position: | chr25:22203645-22203958 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 26 |
| Conread position: | 95-469 |
| Cow position: | chr25:12097884-12097522 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 371, 113 |
| Conread position: | 95-473 |
| Cow position: | chr25:10643265-10643632 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 70 |
| Conread position: | 97-347 |
| Cow position: | chr25:40904788-40905028 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 150, 67 |
| Conread position: | 97-385 |
| Cow position: | chr25:61692-61421 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 162, 76 |
| Conread position: | 97-499 |
| Cow position: | chr25:6885929-6886320 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 80 |
| Conread position: | 115-347 |
| Cow position: | chr25:26269913-26270133 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 115-471 |
| Cow position: | chr25:10504313-10504659 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 273, 52 |
| Conread position: | 142-406 |
| Cow position: | chr25:16001528-16001778 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 241, 34 |
| Conread position: | 163-368 |
| Cow position: | chr25:12899733-12899536 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 178-387 |
| Cow position: | chr25:15286579-15286778 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 178-412 |
| Cow position: | chr25:11139611-11139387 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 238-473 |
| Cow position: | chr25:10657117-10657361 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 141, 78 |
| Conread position: | 239-473 |
| Cow position: | chr25:6803458-6803240 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.