Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 88-473 |
| Cow position: | chr28:10681765-10682138 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 6 |
| Conread position: | 89-347 |
| Cow position: | chr28:4881183-4881437 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 165, 84 |
| Conread position: | 89-350 |
| Cow position: | chr28:10999612-10999863 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 147 |
| Conread position: | 89-357 |
| Cow position: | chr28:26982681-26982949 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 168, 75 |
| Conread position: | 89-361 |
| Cow position: | chr28:19055071-19054812 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 77, 101 |
| Conread position: | 89-367 |
| Cow position: | chr28:3714858-3714591 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 89-388 |
| Cow position: | chr28:5144464-5144754 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 177, 75 |
| Conread position: | 89-393 |
| Cow position: | chr28:34430366-34430663 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 89-405 |
| Cow position: | chr28:4914034-4914350 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 100 |
| Conread position: | 89-406 |
| Cow position: | chr28:19079788-19080097 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-407 |
| Cow position: | chr28:2899046-2898745 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 89-414 |
| Cow position: | chr28:22485310-22484991 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 77, 103 |
| Conread position: | 89-415 |
| Cow position: | chr28:8408791-8408479 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 294, 75 |
| Conread position: | 89-415 |
| Cow position: | chr28:21502449-21502137 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 89-423 |
| Cow position: | chr28:34230285-34229963 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 89-431 |
| Cow position: | chr28:26743683-26743348 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 94 |
| Conread position: | 89-441 |
| Cow position: | chr28:2819832-2819474 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 77, 217 |
| Conread position: | 89-445 |
| Cow position: | chr28:27218380-27218033 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 84 |
| Conread position: | 89-446 |
| Cow position: | chr28:31109947-31110294 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 89-469 |
| Cow position: | chr28:8347788-8347410 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 296, 75 |
| Conread position: | 89-473 |
| Cow position: | chr28:662163-661797 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 97, 78 |
| Conread position: | 89-473 |
| Cow position: | chr28:5827007-5826632 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 77 |
| Conread position: | 89-473 |
| Cow position: | chr28:12758443-12758823 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 89-473 |
| Cow position: | chr28:19222094-19222461 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 89-473 |
| Cow position: | chr28:28765846-28766227 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 87 |
| Conread position: | 89-473 |
| Cow position: | chr28:34442701-34443079 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 197, 63 |
| Conread position: | 89-474 |
| Cow position: | chr28:6059413-6059785 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 76 |
| Conread position: | 89-474 |
| Cow position: | chr28:16109996-16109636 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 106 |
| Conread position: | 89-495 |
| Cow position: | chr28:14657754-14657358 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 77 |
| Conread position: | 89-500 |
| Cow position: | chr28:4307840-4308242 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 92-341 |
| Cow position: | chr28:11866611-11866855 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 191, 84 |
| Conread position: | 92-384 |
| Cow position: | chr28:10053271-10053566 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 184 |
| Conread position: | 92-406 |
| Cow position: | chr28:25249408-25249106 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 103, 73 |
| Conread position: | 95-378 |
| Cow position: | chr28:18625285-18625001 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 109, 251 |
| Conread position: | 95-409 |
| Cow position: | chr28:3078630-3078930 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 95-420 |
| Cow position: | chr28:3408167-3408480 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 68, 97 |
| Conread position: | 95-473 |
| Cow position: | chr28:10615895-10616266 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 119 |
| Conread position: | 95-473 |
| Cow position: | chr28:25763073-25762716 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 71 |
| Conread position: | 95-478 |
| Cow position: | chr28:23530925-23530543 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 167 |
| Conread position: | 98-264 |
| Cow position: | chr28:3011221-3011388 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 100-416 |
| Cow position: | chr28:19025959-19026262 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 66, 164 |
| Conread position: | 100-469 |
| Cow position: | chr28:9285324-9285676 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 161 |
| Conread position: | 106-416 |
| Cow position: | chr28:16252816-16253114 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 112-339 |
| Cow position: | chr28:15944188-15943965 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 207, 52 |
| Conread position: | 112-469 |
| Cow position: | chr28:7267909-7268245 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 115-417 |
| Cow position: | chr28:13176650-13176939 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 127-447 |
| Cow position: | chr28:22170690-22171009 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 137 |
| Conread position: | 129-453 |
| Cow position: | chr28:16407108-16406791 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 130-409 |
| Cow position: | chr28:16386490-16386758 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 178-410 |
| Cow position: | chr28:24367962-24368204 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 70, 8 |
| Conread position: | 183-473 |
| Cow position: | chr28:14151199-14150922 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 41 |
| Conread position: | 186-391 |
| Cow position: | chr28:26340305-26340102 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.